Structure based on 3su9

Ideal structure
Name: (2r)-2-{[(2r,3r,4r,5s,6r)-3-(acetylamino)-2-{[(s)-{[(r)-{[(2r,3s,4r,5r)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2h)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2h-pyran-4-yl]oxy}propanoic acid
Formula: C20 H31 N3 O19 P2
Weight: 679.416
SMILES: "C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH]1NC(C)=O)C(O)=O"
Spacial conformation based on PDB 3su9.
Also present in other 10 PDB entries.
RESIDUE   EPZ     75
CONECT      C1     4 O1   C2   O5   H1  
CONECT      O1     2 C1   PB  
CONECT      C2     4 C1   N2   C3   H2  
CONECT      N2     3 C2   C7   HN2 
CONECT      C3     4 C2   O3   C4   H3  
CONECT      O3     2 C3   C2E 
CONECT      C4     4 C3   O4   C5   H4  
CONECT      O4     2 C4   HO4 
CONECT      C5     4 C4   O5   C6   H5  
CONECT      O5     2 C1   C5  
CONECT      C6     4 C5   O6   H6   H6A 
CONECT      O6     2 C6   HO6 
CONECT      C7     3 N2   O7   C8  
CONECT      O7     1 C7  
CONECT      C8     4 C7   H8   H8A  H8B 
CONECT      PA     4 O1A  O2A  O3A  O5D 
CONECT      PB     4 O1   O1B  O2B  O3A 
CONECT      O1A    1 PA  
CONECT      O1B    2 PB   HO1B
CONECT      C1D    4 N1U  C2D  O4D  H1D 
CONECT      C1E    3 O1E  C2E  O2E 
CONECT      O1E    2 C1E  HO1E
CONECT      N1U    3 C1D  C2U  C6U 
CONECT      O2A    2 PA   HO2A
CONECT      O2B    1 PB  
CONECT      C2D    4 C1D  O2D  C3D  H2D 
CONECT      O2D    2 C2D  HO2D
CONECT      C2E    4 O3   C1E  C3E  H2E 
CONECT      O2E    1 C1E 
CONECT      C2U    3 N1U  O2U  N3U 
CONECT      O2U    1 C2U 
CONECT      O3A    2 PA   PB  
CONECT      C3D    4 C2D  O3D  C4D  H3D 
CONECT      O3D    2 C3D  HO3D
CONECT      C3E    4 C2E  H3E  H3EA H3EB
CONECT      N3U    3 C2U  C4U  HN3U
CONECT      C4D    4 C3D  O4D  C5D  H4D 
CONECT      O4D    2 C1D  C4D 
CONECT      C4U    3 N3U  O4U  C5U 
CONECT      O4U    1 C4U 
CONECT      C5D    4 C4D  O5D  H5D  H5DA
CONECT      O5D    2 PA   C5D 
CONECT      C5U    3 C4U  C6U  H5U 
CONECT      C6U    3 N1U  C5U  H6U 
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      HN2    1 N2  
CONECT      H3     1 C3  
CONECT      H4     1 C4  
CONECT      HO4    1 O4  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H6A    1 C6  
CONECT      HO6    1 O6  
CONECT      H8     1 C8  
CONECT      H8A    1 C8  
CONECT      H8B    1 C8  
CONECT      HO1B   1 O1B 
CONECT      H1D    1 C1D 
CONECT      HO1E   1 O1E 
CONECT      HO2A   1 O2A 
CONECT      H2D    1 C2D 
CONECT      HO2D   1 O2D 
CONECT      H2E    1 C2E 
CONECT      H3D    1 C3D 
CONECT      HO3D   1 O3D 
CONECT      H3E    1 C3E 
CONECT      H3EA   1 C3E 
CONECT      H3EB   1 C3E 
CONECT      H4D    1 C4D 
CONECT      H5D    1 C5D 
CONECT      H5DA   1 C5D 
CONECT      H5U    1 C5U 
CONECT      H6U    1 C6U 
CONECT      HN3U   1 N3U 
END   
HET    EPZ             75
HETNAM     EPZ (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)
HETNAM   2 EPZ -{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H
HETNAM   3 EPZ )-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydrox
HETNAM   4 EPZ y)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(
HETNAM   5 EPZ hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic ac
HETNAM   6 EPZ id
FORMUL      EPZ    C20 H31 N3 O19 P2

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