Structure based on 1jcl

Ideal structure
Name: 1-hydroxy-pentane-3,4-diol-5-phosphate
Formula: C5 H13 O7 P
Weight: 216.126
SMILES: "OCC[CH](O)[CH](O)CO[P](O)(O)=O"
Spacial conformation based on PDB 1jcl.
Also present in other 7 PDB entries.
RESIDUE   HPD     26
CONECT      P      4 O5'  O1P  O2P  O3P 
CONECT      O5'    2 P    C5' 
CONECT      O1P    1 P   
CONECT      O2P    2 P    HOP2
CONECT      O3P    2 P    HOP3
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      O4'    2 C4'  HO'4
CONECT      O3'    2 C3'  HO'3
CONECT      C1'    4 O1'  C2'  H1'1 H1'2
CONECT      O1'    2 C1'  HO'1
CONECT      C3'    4 O3'  C4'  C2'  H3' 
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      HOP2   1 O2P 
CONECT      HOP3   1 O3P 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      HO'4   1 O4' 
CONECT      HO'3   1 O3' 
CONECT      H1'1   1 C1' 
CONECT      H1'2   1 C1' 
CONECT      HO'1   1 O1' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
END   
HET    HPD             26
HETSYN     HPD OPEN FORM OF 2'-DEOXY-RIBOFURANOSE-5'-PHOSPHATE
HETNAM     HPD 1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE
FORMUL      HPD    C5 H13 O7 P1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science