Structure based on 1lpg

Ideal structure
Name: [4-({[5-benzyloxy-1-(3-carbamimidoyl-benzyl)-1h-indole-2-carbonyl]-amino}-methyl)-phenyl]-trimethyl-ammonium
Formula: C34 H36 N5 O2
Weight: 546.682
SMILES: "C[N+](C)(C)c1ccc(CNC(=O)c2cc3cc(OCc4ccccc4)ccc3n2Cc5cccc(c5)C(N)=N)cc1"
Spacial conformation based on PDB 1lpg.
Also present on 1lqe
RESIDUE   IMA     77
CONECT      C11    3 C12  C16  O1  
CONECT      C12    3 C11  C13  H12 
CONECT      C13    3 C12  C14  H13 
CONECT      C14    3 C13  C15  N18 
CONECT      C15    3 C14  C16  C17 
CONECT      C16    3 C11  C15  H16 
CONECT      C17    3 C15  C19  H17 
CONECT      N18    3 C14  C19  C20 
CONECT      C19    3 C17  N18  C21 
CONECT      C20    4 N18  C28  H201 H202
CONECT      C21    3 C19  N22  O27 
CONECT      N22    3 C21  C23  H22 
CONECT      C23    4 N22  C24  H231 H232
CONECT      C24    3 C23  C42  C43 
CONECT      O27    1 C21 
CONECT      C28    3 C20  C32  C33 
CONECT      C31    3 C32  C35  C36 
CONECT      C32    3 C28  C31  H32 
CONECT      C33    3 C28  C34  H33 
CONECT      C34    3 C33  C35  H34 
CONECT      C35    3 C31  C34  H35 
CONECT      C36    3 C31  N37  N38 
CONECT      N37    3 C36  H371 H372
CONECT      N38    2 C36  H38 
CONECT      C39    3 C40  C43  H39 
CONECT      C40    3 C39  C41  N44 
CONECT      C41    3 C40  C42  H41 
CONECT      C42    3 C24  C41  H42 
CONECT      C43    3 C24  C39  H43 
CONECT      N44    4 C40  C45  C49  C53 
CONECT      C45    4 N44  H451 H452 H453
CONECT      C49    4 N44  H491 H492 H493
CONECT      C53    4 N44  H531 H532 H533
CONECT      O1     2 C11  C1  
CONECT      C1     4 O1   C2   HC11 HC12
CONECT      C2     3 C1   C3   C7  
CONECT      C3     3 C2   C4   HC3 
CONECT      C4     3 C3   C5   HC4 
CONECT      C5     3 C4   C6   HC5 
CONECT      C6     3 C5   C7   HC6 
CONECT      C7     3 C2   C6   HC7 
CONECT      H12    1 C12 
CONECT      H13    1 C13 
CONECT      H16    1 C16 
CONECT      H17    1 C17 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H22    1 N22 
CONECT      H231   1 C23 
CONECT      H232   1 C23 
CONECT      H32    1 C32 
CONECT      H33    1 C33 
CONECT      H34    1 C34 
CONECT      H35    1 C35 
CONECT      H371   1 N37 
CONECT      H372   1 N37 
CONECT      H38    1 N38 
CONECT      H39    1 C39 
CONECT      H41    1 C41 
CONECT      H42    1 C42 
CONECT      H43    1 C43 
CONECT      H451   1 C45 
CONECT      H452   1 C45 
CONECT      H453   1 C45 
CONECT      H491   1 C49 
CONECT      H492   1 C49 
CONECT      H493   1 C49 
CONECT      H531   1 C53 
CONECT      H532   1 C53 
CONECT      H533   1 C53 
CONECT      HC11   1 C1  
CONECT      HC12   1 C1  
CONECT      HC3    1 C3  
CONECT      HC4    1 C4  
CONECT      HC5    1 C5  
CONECT      HC6    1 C6  
CONECT      HC7    1 C7  
END   
HET    IMA             77
HETNAM     IMA [4-({[5-BENZYLOXY-1-(3-CARBAMIMIDOYL-BENZYL)-1H-INDOLE-
HETNAM   2 IMA 2-CARBONYL]-AMINO}-METHYL)-PHENYL]-TRIMETHYL-AMMONIUM
FORMUL      IMA    C34 H36 N5 O2 1+

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science