Structure based on 2ybe

Ideal structure
Name: l-adenosine-5'-diphosphate
Formula: C10 H15 N5 O10 P2
Weight: 427.201
SMILES: "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"
Spacial conformation based on PDB 2ybe.
Also present on 2y3i
RESIDUE   LA8     42
CONECT      N1     2 C2   C6  
CONECT      C2     3 N1   N3   H2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N9  
CONECT      C5     3 C4   C6   N7  
CONECT      C6     3 N1   C5   N6  
CONECT      N6     3 C6   HN6  HN6A
CONECT      N7     2 C5   C8  
CONECT      C8     3 N7   N9   H8  
CONECT      N9     3 C4   C8   C1' 
CONECT      PA     4 O1A  O2A  O3A  O5' 
CONECT      PB     4 O1B  O2B  O3A  O3B 
CONECT      C1'    4 N9   C3'  O4'  H1' 
CONECT      O1A    1 PA  
CONECT      O1B    2 PB   HO1B
CONECT      C2'    4 O2'  C3'  C4'  H2' 
CONECT      O2'    2 C2'  HO2'
CONECT      O2A    2 PA   HO2A
CONECT      O2B    1 PB  
CONECT      C3'    4 C1'  C2'  O3'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      O3A    2 PA   PB  
CONECT      O3B    2 PB   HO3B
CONECT      C4'    4 C2'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H5'  H5'A
CONECT      O5'    2 PA   C5' 
CONECT      H2     1 C2  
CONECT      HN6    1 N6  
CONECT      HN6A   1 N6  
CONECT      H8     1 C8  
CONECT      H1'    1 C1' 
CONECT      HO1B   1 O1B 
CONECT      H2'    1 C2' 
CONECT      HO2'   1 O2' 
CONECT      HO2A   1 O2A 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      HO3B   1 O3B 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H5'A   1 C5' 
END   
HET    LA8             42
HETSYN     LA8 L-ADP
HETNAM     LA8 L-ADENOSINE-5'-DIPHOSPHATE
FORMUL      LA8    C10 H15 N5 O10 P2

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science