Structure based on 4i8u

Ideal structure
Name: 4-amino-1-{2-deoxy-5-o-[(r)-hydroxy(phosphonooxy)phosphoryl]-beta-l-erythro-pentofuranosyl}pyrimidin-2(1h)-one
Formula: C9 H15 N3 O10 P2
Weight: 387.177
SMILES: "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O2"
Spacial conformation based on PDB 4i8u.
Also present on 4qwc
RESIDUE   LTP     39
CONECT      OAE    2 PAF  H1  
CONECT      PAF    4 OAE  OAG  OBB  OAH 
CONECT      OAG    2 PAF  H2  
CONECT      OBB    1 PAF 
CONECT      OAH    2 PAF  PAI 
CONECT      PAI    4 OAH  OAJ  OAK  OAL 
CONECT      OAJ    1 PAI 
CONECT      OAK    2 PAI  H3  
CONECT      OAL    2 PAI  CAM 
CONECT      CAM    4 OAL  CAN  H4   H5  
CONECT      CAN    4 CAM  OAO  CAP  H6  
CONECT      OAO    2 CAN  CAR 
CONECT      CAP    4 CAN  O12  CAQ  H7  
CONECT      O12    2 CAP  H8  
CONECT      CAQ    4 CAP  CAR  H9   H10 
CONECT      CAR    4 OAO  CAQ  N1   H11 
CONECT      N1     3 CAR  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      C6     3 N1   C5   H12 
CONECT      C5     3 C6   C4   H13 
CONECT      C4     3 C5   NAX  N3  
CONECT      NAX    3 C4   H14  H15 
CONECT      N3     2 C2   C4  
CONECT      H1     1 OAE 
CONECT      H2     1 OAG 
CONECT      H3     1 OAK 
CONECT      H4     1 CAM 
CONECT      H5     1 CAM 
CONECT      H6     1 CAN 
CONECT      H7     1 CAP 
CONECT      H8     1 O12 
CONECT      H9     1 CAQ 
CONECT      H10    1 CAQ 
CONECT      H11    1 CAR 
CONECT      H12    1 C6  
CONECT      H13    1 C5  
CONECT      H14    1 NAX 
CONECT      H15    1 NAX 
END   
HET    LTP             39
HETNAM     LTP 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy(phosphonooxy)phosph
HETNAM   2 LTP oryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one
FORMUL      LTP    C9 H15 N3 O10 P2

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science