Structure based on 1aa6

Ideal structure
Name: 2-amino-5,6-dimercapto-7-methyl-3,7,8a,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide
Formula: C20 H26 N10 O13 P2 S2
Weight: 740.557
SMILES: "NC1=NC2=C(N[CH]3[CH](N2)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6C(=O)NC(=Nc56)N)C(=C3S)S)C(=O)N1"
Spacial conformation based on PDB 1aa6.
Also present in other 69 PDB entries.
RESIDUE   MGD     73
CONECT      PB     4 O1B  O2B  O3B  O5' 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   HOB2
CONECT      O3B    2 PB   PA  
CONECT      O3A    2 PA   C10 
CONECT      PA     4 O3B  O3A  O1A  O2A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   HOA2
CONECT      O5'    2 PB   C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  O2'  C1'  H2' 
CONECT      O2'    2 C2'  HO2'
CONECT      C1'    4 O4'  C2'  N9   H1' 
CONECT      N9     3 C1'  C8   C4  
CONECT      C8     3 N9   N7   H8  
CONECT      N7     2 C8   C5  
CONECT      C5     3 N7   C6   C4  
CONECT      C6     3 C5   O6   N1  
CONECT      O6     1 C6  
CONECT      N1     3 C6   C2   HN1 
CONECT      C2     3 N1   N2   N3  
CONECT      N2     3 C2   HN21 HN22
CONECT      N3     2 C2   C4  
CONECT      C4     3 N9   C5   N3  
CONECT      C10    4 O3A  C11  H101 H102
CONECT      C11    4 C10  O11  C12  H11 
CONECT      O11    2 C11  C23 
CONECT      C12    3 C11  S12  C13 
CONECT      S12    2 C12  H12 
CONECT      C13    3 C12  S13  C14 
CONECT      S13    2 C13  H13 
CONECT      C14    4 C13  N15  C23  H14 
CONECT      N15    3 C14  C16  H15 
CONECT      C16    3 N15  C17  C21 
CONECT      C17    3 C16  O17  N18 
CONECT      O17    1 C17 
CONECT      N18    3 C17  C19  H18 
CONECT      C19    3 N18  N19  N20 
CONECT      N19    3 C19  H191 H192
CONECT      N20    2 C19  C21 
CONECT      C21    3 C16  N20  N22 
CONECT      N22    3 C21  C23  H22 
CONECT      C23    4 O11  C14  N22  H23 
CONECT      HOB2   1 O2B 
CONECT      HOA2   1 O2A 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      HO2'   1 O2' 
CONECT      H1'    1 C1' 
CONECT      H8     1 C8  
CONECT      HN1    1 N1  
CONECT      HN21   1 N2  
CONECT      HN22   1 N2  
CONECT      H101   1 C10 
CONECT      H102   1 C10 
CONECT      H11    1 C11 
CONECT      H12    1 S12 
CONECT      H13    1 S13 
CONECT      H14    1 C14 
CONECT      H15    1 N15 
CONECT      H18    1 N18 
CONECT      H191   1 N19 
CONECT      H192   1 N19 
CONECT      H22    1 N22 
CONECT      H23    1 C23 
END   
HET    MGD             73
HETSYN     MGD MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE
HETNAM     MGD 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-O
HETNAM   2 MGD XA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEO
HETNAM   3 MGD TIDE
FORMUL      MGD    C20 H26 N10 O13 P2 S2

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OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science