Structure based on 1y57

Ideal structure
Name: 4-[(4-methylpiperazin-1-yl)methyl]-n-{3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl}benzamide
Formula: C28 H29 N7 O
Weight: 479.576
SMILES: "CN1CCN(CC1)Cc2ccc(cc2)C(=O)Nc3cccc(Nc4nccc(n4)c5cccnc5)c3"
Spacial conformation based on PDB 1y57
RESIDUE   MPZ     65
CONECT      O16    1 C15 
CONECT      C15    3 O16  C14  N17 
CONECT      C14    3 C15  C13  C11 
CONECT      C13    3 C14  C12  H13 
CONECT      C12    3 C13  C09  H12 
CONECT      C11    3 C14  C10  H11 
CONECT      C10    3 C11  C09  H10 
CONECT      C09    3 C12  C10  C08 
CONECT      C08    4 C09  N07  H081 H082
CONECT      N07    3 C08  C06  C04 
CONECT      C06    4 N07  C05  H061 H062
CONECT      C05    4 C06  NP2  H051 H052
CONECT      C04    4 N07  C03  H041 H042
CONECT      C03    4 C04  NP2  H031 H032
CONECT      NP2    3 C05  C03  C01 
CONECT      C01    4 NP2  H011 H012 H013
CONECT      N17    3 C15  C18  H17 
CONECT      C18    3 N17  C19  C22 
CONECT      C19    3 C18  C20  H19 
CONECT      C20    3 C19  C21  H20 
CONECT      C21    3 C20  C23  H21 
CONECT      C23    3 C21  C22  N24 
CONECT      C22    3 C18  C23  H22 
CONECT      N24    3 C23  C25  H24 
CONECT      C25    3 N24  N26  N29 
CONECT      N26    2 C25  C27 
CONECT      C27    3 N26  C28  H27 
CONECT      C28    3 C27  C30  H28 
CONECT      C30    3 C28  N29  C31 
CONECT      N29    2 C25  C30 
CONECT      C31    3 C30  C32  C33 
CONECT      C32    3 C31  C36  H32 
CONECT      C36    3 C32  C35  H36 
CONECT      C35    3 C36  N34  H35 
CONECT      N34    2 C35  C33 
CONECT      C33    3 C31  N34  H33 
CONECT      H13    1 C13 
CONECT      H12    1 C12 
CONECT      H11    1 C11 
CONECT      H10    1 C10 
CONECT      H081   1 C08 
CONECT      H082   1 C08 
CONECT      H061   1 C06 
CONECT      H062   1 C06 
CONECT      H051   1 C05 
CONECT      H052   1 C05 
CONECT      H041   1 C04 
CONECT      H042   1 C04 
CONECT      H031   1 C03 
CONECT      H032   1 C03 
CONECT      H011   1 C01 
CONECT      H012   1 C01 
CONECT      H013   1 C01 
CONECT      H17    1 N17 
CONECT      H19    1 C19 
CONECT      H20    1 C20 
CONECT      H21    1 C21 
CONECT      H22    1 C22 
CONECT      H24    1 N24 
CONECT      H27    1 C27 
CONECT      H28    1 C28 
CONECT      H32    1 C32 
CONECT      H36    1 C36 
CONECT      H35    1 C35 
CONECT      H33    1 C33 
HET    MPZ             65
FORMUL      MPZ    C28 H29 N7 O1

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science