Structure based on 1n5y

Ideal structure
Name: n2-(3-mercaptopropyl)-2'-deoxyguanosine-5'-monophosphate
Formula: C13 H20 N5 O7 P S
Weight: 421.366
SMILES: "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCCCS"
Spacial conformation based on PDB 1n5y.
Also present in other 22 PDB entries.
RESIDUE   MRG     47
CONECT      P      4 OP1  OP2  O5'  OP3 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      O5'    2 P    C5' 
CONECT      N9     3 C4   C8   C1' 
CONECT      C4     3 N9   N3   C5  
CONECT      N3     2 C4   C2  
CONECT      C2     3 N3   N1   N2  
CONECT      N1     3 C2   C6   H1  
CONECT      C6     3 N1   O6   C5  
CONECT      O6     1 C6  
CONECT      C5     3 C4   C6   N7  
CONECT      N7     2 C5   C8  
CONECT      C8     3 N9   N7   H8  
CONECT      N2     3 C2   C21  H21 
CONECT      C21    4 N2   C22  H211 H212
CONECT      C22    4 C21  C23  H221 H222
CONECT      C23    4 C22  S24  H231 H232
CONECT      S24    2 C23  H24 
CONECT      C2'    4 C1'  C3'  H2'  H2''
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 N9   C2'  O4'  H1' 
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      OP3    2 P    HOP3
CONECT      HOP2   1 OP2 
CONECT      H1     1 N1  
CONECT      H8     1 C8  
CONECT      H21    1 N2  
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H221   1 C22 
CONECT      H222   1 C22 
CONECT      H231   1 C23 
CONECT      H232   1 C23 
CONECT      H24    1 S24 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      HOP3   1 OP3 
END   
HET    MRG             47
HETNAM     MRG N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUANOSINE-5'-MONOPHOSPHAT
HETNAM   2 MRG E
FORMUL      MRG    C13 H20 N5 O7 P1 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science