Hetgroup: N5I

Structure based on ?

Ideal structure

Name: 1-(2-deoxy-5-o-phosphono-beta-d-erythro-pentofuranosyl)-5-nitro-1h-indole

Formula: C13 H15 N2 O8 P

Weight: 358.241

SMILES: "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2ccc3cc(ccc23)[N+]([O-])=O"

Spacial conformation based on PDB ?.
Also present on 2oyq

RESIDUE   N5I     39
CONECT      O3P    2 P    HOP3
CONECT      OR2    1 NRO 
CONECT      NRO    3 OR2  OR1  CZ3 
CONECT      OR1    1 NRO 
CONECT      CZ3    3 NRO  CE3  CH2 
CONECT      CE3    3 CZ3  CD2  HE3 
CONECT      CD2    3 CE3  CE2  CG  
CONECT      CH2    3 CZ3  CZ2  HH2 
CONECT      CZ2    3 CH2  CE2  HZ2 
CONECT      CE2    3 CD2  CZ2  NE1 
CONECT      NE1    3 CE2  CD1  C1' 
CONECT      CD1    3 NE1  CG   HD1 
CONECT      CG     3 CD2  CD1  HG  
CONECT      C1'    4 NE1  O4'  C2'  H1' 
CONECT      O4'    2 C1'  C4' 
CONECT      C4'    4 O4'  C3'  C5'  H4' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  H3T 
CONECT      C2'    4 C1'  C3'  H2'1 H2'2
CONECT      C5'    4 C4'  O5'  H5'1 H5'2
CONECT      O5'    2 C5'  P   
CONECT      P      4 O3P  O5'  O2P  O1P 
CONECT      O2P    2 P    HOP2
CONECT      O1P    1 P   
CONECT      HOP3   1 O3P 
CONECT      HE3    1 CE3 
CONECT      HH2    1 CH2 
CONECT      HZ2    1 CZ2 
CONECT      HD1    1 CD1 
CONECT      HG     1 CG  
CONECT      H1'    1 C1' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      H3T    1 O3' 
CONECT      H2'1   1 C2' 
CONECT      H2'2   1 C2' 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      HOP2   1 O2P 
END   
HET    N5I             39
HETSYN     N5I 5-NITRO-1-INDOLYL-2'-DEOXYRIBOSIDE-5'-MONOPHOSPHATE
HETNAM     N5I 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)
HETNAM   2 N5I -5-NITRO-1H-INDOLE
FORMUL      N5I    C13 H15 N2 O8 P1

This OCA

MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)