Structure based on 1ksw

Ideal structure
Name: n6-benzyl adenosine-5'-diphosphate
Formula: C17 H21 N5 O10 P2
Weight: 517.324
SMILES: "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)n2cnc3c(NCc4ccccc4)ncnc23"
Spacial conformation based on PDB 1ksw
RESIDUE   NBS     55
CONECT      PB     4 O4P  O5P  O6P  O3P 
CONECT      O4P    2 PB   HOP4
CONECT      O5P    2 PB   HOP5
CONECT      O6P    1 PB  
CONECT      PA     4 O1P  O2P  O3P  O5' 
CONECT      O1P    2 PA   HOP1
CONECT      O2P    1 PA  
CONECT      O3P    2 PB   PA  
CONECT      O5'    2 PA   C5' 
CONECT      C5'    4 O5'  C4'  H5'1 H5'2
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C1'    4 O4'  N9   C2'  H1' 
CONECT      N9     3 C1'  C4   C8  
CONECT      C4     3 N9   N3   C5  
CONECT      N3     2 C4   C2  
CONECT      C2     3 N3   N1   H2  
CONECT      N1     2 C2   C6  
CONECT      C6     3 N1   N6   C5  
CONECT      N6     3 C6   CB1  H6  
CONECT      CB1    4 N6   CB2  HB11 HB12
CONECT      CB2    3 CB1  CB3  CB7 
CONECT      CB3    3 CB2  CB4  HB3 
CONECT      CB4    3 CB3  CB5  HB4 
CONECT      CB5    3 CB4  CB6  HB5 
CONECT      CB6    3 CB5  CB7  HB6 
CONECT      CB7    3 CB2  CB6  HB7 
CONECT      C5     3 C4   C6   N7  
CONECT      N7     2 C5   C8  
CONECT      C8     3 N9   N7   H8  
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  HO'2
CONECT      C3'    4 C4'  C2'  O3'  H3' 
CONECT      O3'    2 C3'  HO'3
CONECT      HOP4   1 O4P 
CONECT      HOP5   1 O5P 
CONECT      HOP1   1 O1P 
CONECT      H5'1   1 C5' 
CONECT      H5'2   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H1'    1 C1' 
CONECT      H2     1 C2  
CONECT      H6     1 N6  
CONECT      HB11   1 CB1 
CONECT      HB12   1 CB1 
CONECT      HB3    1 CB3 
CONECT      HB4    1 CB4 
CONECT      HB5    1 CB5 
CONECT      HB6    1 CB6 
CONECT      HB7    1 CB7 
CONECT      H8     1 C8  
CONECT      H2'    1 C2' 
CONECT      HO'2   1 O2' 
CONECT      H3'    1 C3' 
CONECT      HO'3   1 O3' 
HET    NBS             55
FORMUL      NBS    C17 H21 N5 O10 P2

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science