Structure based on 3qf9

Ideal structure
Name: 6-{5-[(z)-(2,4-dioxo-1,3-thiazolidin-5-ylidene)methyl]furan-2-yl}-n-{3-[(4-ethylpiperazin-1-yl)methyl]-5-(trifluoromethyl)phenyl}naphthalene-1-carboxamide
Formula: C33 H29 F3 N4 O4 S
Weight: 634.668
SMILES: "CCN1CCN(CC1)Cc2cc(NC(=O)c3cccc4cc(ccc34)c5oc(cc5)C=C6SC(=O)NC6=O)cc(c2)C(F)(F)F"
Spacial conformation based on PDB 3qf9
RESIDUE   NM8     74
CONECT      CAA    3 CAB  CAF  HAA 
CONECT      CAB    3 CAA  CAC  CAT 
CONECT      CAC    3 CAB  CAD  CAW 
CONECT      CAD    3 CAC  CAE  HAD 
CONECT      CAE    3 CAD  CAF  CAG 
CONECT      CAF    3 CAA  CAE  HAF 
CONECT      CAG    3 CAE  CAH  OAK 
CONECT      CAH    3 CAG  CAI  HAH 
CONECT      CAI    3 CAH  CAJ  HAI 
CONECT      CAJ    3 CAI  OAK  CAL 
CONECT      OAK    2 CAG  CAJ 
CONECT      CAL    3 CAJ  CAM  HAL 
CONECT      CAM    3 CAL  CAN  SAQ 
CONECT      CAN    3 CAM  NAO  OAR 
CONECT      NAO    3 CAN  CAP  HNAO
CONECT      CAP    3 NAO  SAQ  OAS 
CONECT      SAQ    2 CAM  CAP 
CONECT      OAR    1 CAN 
CONECT      OAS    1 CAP 
CONECT      CAT    3 CAB  CAU  CAX 
CONECT      CAU    3 CAT  CAV  HAU 
CONECT      CAV    3 CAU  CAW  HAV 
CONECT      CAW    3 CAC  CAV  HAW 
CONECT      CAX    3 CAT  OAY  NAZ 
CONECT      OAY    1 CAX 
CONECT      NAZ    3 CAX  HNAZ C21 
CONECT      HAA    1 CAA 
CONECT      HAD    1 CAD 
CONECT      HAF    1 CAF 
CONECT      HAH    1 CAH 
CONECT      HAI    1 CAI 
CONECT      HAL    1 CAL 
CONECT      HNAO   1 NAO 
CONECT      HAU    1 CAU 
CONECT      HAV    1 CAV 
CONECT      HAW    1 CAW 
CONECT      HNAZ   1 NAZ 
CONECT      C20    3 C21  C25  H12 
CONECT      C21    3 NAZ  C20  C22 
CONECT      C22    3 C21  C23  H13 
CONECT      C23    3 C22  C24  C26 
CONECT      C24    3 C23  C25  H14 
CONECT      C25    3 C20  C24  C27 
CONECT      C26    4 C23  F1   F2   F3  
CONECT      F1     1 C26 
CONECT      F2     1 C26 
CONECT      F3     1 C26 
CONECT      C27    4 C25  N3   H15  H16 
CONECT      N3     3 C27  C28  C29 
CONECT      C28    4 N3   C31  H17  H18 
CONECT      C29    4 N3   C30  H19  H20 
CONECT      C30    4 C29  N4   H21  H22 
CONECT      N4     3 C30  C31  C32 
CONECT      C31    4 C28  N4   H23  H24 
CONECT      C32    4 N4   C33  H25  H26 
CONECT      C33    4 C32  H27  H28  H29 
CONECT      H12    1 C20 
CONECT      H13    1 C22 
CONECT      H14    1 C24 
CONECT      H15    1 C27 
CONECT      H16    1 C27 
CONECT      H17    1 C28 
CONECT      H18    1 C28 
CONECT      H19    1 C29 
CONECT      H20    1 C29 
CONECT      H21    1 C30 
CONECT      H22    1 C30 
CONECT      H23    1 C31 
CONECT      H24    1 C31 
CONECT      H25    1 C32 
CONECT      H26    1 C32 
CONECT      H27    1 C33 
CONECT      H28    1 C33 
CONECT      H29    1 C33 
END   
HET    NM8             74
HETSYN     NM8 (Z)-6-(5-((2,4-dioxothiazolidin-5-ylidene)methyl)furan-
HETSYN   2 NM8 2-yl)-N-(3-((4-ethylpiperazin-1-yl)methyl)-5-(trifluoro
HETSYN   3 NM8 methyl)phenyl)-1-naphthamide
HETNAM     NM8 6-{5-[(Z)-(2,4-dioxo-1,3-thiazolidin-5-ylidene)methyl]f
HETNAM   2 NM8 uran-2-yl}-N-{3-[(4-ethylpiperazin-1-yl)methyl]-5-(trif
HETNAM   3 NM8 luoromethyl)phenyl}naphthalene-1-carboxamide
FORMUL      NM8    C33 H29 F3 N4 O4 S1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science