Structure based on 1e03

Ideal structure
Name: heparin pentasaccharide
Formula: C36 H60 O55 S9
Weight: 1661.414
Spacial conformation based on PDB 1e03.
Also present on 1azx, 1nq9, 3kcg
RESIDUE   NTP    160
CONECT      O10    2 C11  C12 
CONECT      C11    4 O10  H111 H112 H113
CONECT      C12    4 O10  C13  C1B  H12 
CONECT      C13    4 C12  O14  C15  H13 
CONECT      O14    2 C13  C1K 
CONECT      C15    4 C13  O16  H151 H152
CONECT      O16    2 C15  S17 
CONECT      S17    4 O16  O18  O19  O1A 
CONECT      O18    2 S17  HO8 
CONECT      O19    1 S17 
CONECT      O1A    1 S17 
CONECT      C1B    4 C12  O1C  C1E  H1B 
CONECT      O1C    2 C1B  C1D 
CONECT      C1D    4 O1C  H1D1 H1D2 H1D3
CONECT      C1E    4 C1B  O1F  C1K  H1E 
CONECT      O1F    2 C1E  S1G 
CONECT      S1G    4 O1F  O1H  O1I  O1J 
CONECT      O1H    1 S1G 
CONECT      O1I    2 S1G  HO1 
CONECT      O1J    1 S1G 
CONECT      C1K    4 O14  C1E  O1L  H1K 
CONECT      O1L    2 C1K  C20 
CONECT      C20    4 O1L  C21  C26  H20 
CONECT      C21    4 C20  O22  C23  H21 
CONECT      O22    2 C21  C2C 
CONECT      C23    3 C21  O24  O25 
CONECT      O24    1 C23 
CONECT      O25    2 C23  H25 
CONECT      C26    4 C20  O27  C29  H26 
CONECT      O27    2 C26  C28 
CONECT      C28    4 O27  H281 H282 H283
CONECT      C29    4 C26  O2A  C2C  H29 
CONECT      O2A    2 C29  C2B 
CONECT      C2B    4 O2A  H2B1 H2B2 H2B3
CONECT      C2C    4 O22  C29  O2D  H2C 
CONECT      O2D    2 C2C  C30 
CONECT      C30    4 O2D  C31  C39  H30 
CONECT      C31    4 C30  O32  C33  H31 
CONECT      O32    2 C31  C3L 
CONECT      C33    4 C31  O34  H331 H332
CONECT      O34    2 C33  S35 
CONECT      S35    4 O34  O36  O37  O38 
CONECT      O36    1 S35 
CONECT      O37    2 S35  HO7 
CONECT      O38    1 S35 
CONECT      C39    4 C30  O3A  C3F  H39 
CONECT      O3A    2 C39  S3B 
CONECT      S3B    4 O3A  O3C  O3D  O3E 
CONECT      O3C    1 S3B 
CONECT      O3D    2 S3B  HO3D
CONECT      O3E    1 S3B 
CONECT      C3F    4 C39  O3G  C3L  H3F 
CONECT      O3G    2 C3F  S3H 
CONECT      S3H    4 O3G  O3I  O3J  O3K 
CONECT      O3I    2 S3H  HO3I
CONECT      O3J    1 S3H 
CONECT      O3K    1 S3H 
CONECT      C3L    4 O32  C3F  O3M  H3L 
CONECT      O3M    2 C3L  C40 
CONECT      C40    4 O3M  C41  C46  H40 
CONECT      C41    4 C40  O42  C43  H41 
CONECT      O42    2 C41  C4F 
CONECT      C43    3 C41  O44  O45 
CONECT      O44    1 C43 
CONECT      O45    2 C43  H45 
CONECT      C46    4 C40  O47  C49  H46 
CONECT      O47    2 C46  C48 
CONECT      C48    4 O47  H481 H482 H483
CONECT      C49    4 C46  O4A  C4F  H49 
CONECT      O4A    2 C49  S4B 
CONECT      S4B    4 O4A  O4C  O4D  O4E 
CONECT      O4C    2 S4B  HO4 
CONECT      O4D    1 S4B 
CONECT      O4E    1 S4B 
CONECT      C4F    4 O42  C49  O4G  H4F 
CONECT      O4G    2 C4F  C50 
CONECT      C50    4 O4G  C51  C59  H50 
CONECT      C51    4 C50  O52  C53  H51 
CONECT      O52    2 C51  C5L 
CONECT      C53    4 C51  O54  H531 H532
CONECT      O54    2 C53  S55 
CONECT      S55    4 O54  O56  O57  O58 
CONECT      O56    1 S55 
CONECT      O57    1 S55 
CONECT      O58    2 S55  H58 
CONECT      C59    4 C50  O5A  C5F  H59 
CONECT      O5A    2 C59  S5B 
CONECT      S5B    4 O5A  O5C  O5D  O5E 
CONECT      O5C    1 S5B 
CONECT      O5D    2 S5B  HO5D
CONECT      O5E    1 S5B 
CONECT      C5F    4 C59  O5G  C5L  H5F 
CONECT      O5G    2 C5F  S5H 
CONECT      S5H    4 O5G  O5I  O5J  O5K 
CONECT      O5I    2 S5H  HO5I
CONECT      O5J    1 S5H 
CONECT      O5K    1 S5H 
CONECT      C5L    4 O52  C5F  O5M  H5L 
CONECT      O5M    2 C5L  C5N 
CONECT      C5N    4 O5M  H5N1 H5N2 H5N3
CONECT      H111   1 C11 
CONECT      H112   1 C11 
CONECT      H113   1 C11 
CONECT      H12    1 C12 
CONECT      H13    1 C13 
CONECT      H151   1 C15 
CONECT      H152   1 C15 
CONECT      HO8    1 O18 
CONECT      H1B    1 C1B 
CONECT      H1D1   1 C1D 
CONECT      H1D2   1 C1D 
CONECT      H1D3   1 C1D 
CONECT      H1E    1 C1E 
CONECT      HO1    1 O1I 
CONECT      H1K    1 C1K 
CONECT      H20    1 C20 
CONECT      H21    1 C21 
CONECT      H25    1 O25 
CONECT      H26    1 C26 
CONECT      H281   1 C28 
CONECT      H282   1 C28 
CONECT      H283   1 C28 
CONECT      H29    1 C29 
CONECT      H2B1   1 C2B 
CONECT      H2B2   1 C2B 
CONECT      H2B3   1 C2B 
CONECT      H2C    1 C2C 
CONECT      H30    1 C30 
CONECT      H31    1 C31 
CONECT      H331   1 C33 
CONECT      H332   1 C33 
CONECT      HO7    1 O37 
CONECT      H39    1 C39 
CONECT      HO3D   1 O3D 
CONECT      H3F    1 C3F 
CONECT      HO3I   1 O3I 
CONECT      H3L    1 C3L 
CONECT      H40    1 C40 
CONECT      H41    1 C41 
CONECT      H45    1 O45 
CONECT      H46    1 C46 
CONECT      H481   1 C48 
CONECT      H482   1 C48 
CONECT      H483   1 C48 
CONECT      H49    1 C49 
CONECT      HO4    1 O4C 
CONECT      H4F    1 C4F 
CONECT      H50    1 C50 
CONECT      H51    1 C51 
CONECT      H531   1 C53 
CONECT      H532   1 C53 
CONECT      H58    1 O58 
CONECT      H59    1 C59 
CONECT      HO5D   1 O5D 
CONECT      H5F    1 C5F 
CONECT      HO5I   1 O5I 
CONECT      H5L    1 C5L 
CONECT      H5N1   1 C5N 
CONECT      H5N2   1 C5N 
CONECT      H5N3   1 C5N 
HET    NTP            160
FORMUL      NTP    C36 H60 O55 S9

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science