Structure based on 3jr5

Ideal structure
Name: 2'-deoxy-5'-o-{(s)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}-8-oxoguanosine
Formula: C12 H19 N6 O7 P S
Weight: 422.354
SMILES: "NC1=NC2=C(NC(=O)N2[CH]3C[CH](O)[CH](CO[P](O)(=O)NCCS)O3)C(=O)N1"
Spacial conformation based on PDB 3jr5
RESIDUE   OGX     46
CONECT      OP2    1 P   
CONECT      P      4 OP2  N4   O5'  OP1 
CONECT      S      2 C8'  HS  
CONECT      N1     3 C2   C6   HN1 
CONECT      C2     3 N1   N2   N3  
CONECT      N2     3 C2   HN2  HN2A
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N9  
CONECT      N4     3 P    C7'  HN4 
CONECT      C5     3 C4   C6   N7  
CONECT      C6     3 N1   C5   O6  
CONECT      O6     1 C6  
CONECT      N7     3 C5   C8   HN7 
CONECT      C8     3 N7   O8   N9  
CONECT      O8     1 C8  
CONECT      N9     3 C4   C8   C1' 
CONECT      C1'    4 N9   C2'  O4'  H1' 
CONECT      C2'    4 C1'  C3'  H2'  H2'A
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H5'  H5'A
CONECT      O5'    2 P    C5' 
CONECT      C7'    4 N4   C8'  H7'  H7'A
CONECT      C8'    4 S    C7'  H8'  H8'A
CONECT      OP1    2 P    HOP1
CONECT      HS     1 S   
CONECT      HN1    1 N1  
CONECT      HN2    1 N2  
CONECT      HN2A   1 N2  
CONECT      HN4    1 N4  
CONECT      HN7    1 N7  
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H2'A   1 C2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H5'A   1 C5' 
CONECT      H7'    1 C7' 
CONECT      H7'A   1 C7' 
CONECT      H8'    1 C8' 
CONECT      H8'A   1 C8' 
CONECT      HOP1   1 OP1 
END   
HET    OGX             46
HETNAM     OGX 2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosp
HETNAM   2 OGX horyl}-8-oxoguanosine
FORMUL      OGX    C12 H19 N6 O7 P1 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science