Structure based on 1ag3

Ideal structure
Name: 2'-deoxy-n1,n2-propano guanosine monophosphate
Formula: C13 H18 N5 O7 P
Weight: 387.285
SMILES: "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)N4CCCNC4=Nc23"
Spacial conformation based on PDB 1ag3.
Also present in other 7 PDB entries.
RESIDUE   P       44
CONECT      P      4 OP1  OP2  OP3  O5' 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      OP3    2 P    HOP3
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  C1'  H2'  H2''
CONECT      C1'    4 O4'  C2'  N9   H1' 
CONECT      N9     3 C1'  C8   C4  
CONECT      C8     3 N9   N7   H8  
CONECT      N7     2 C8   C5  
CONECT      C5     3 N7   C6   C4  
CONECT      C6     3 C5   O6   N1  
CONECT      O6     1 C6  
CONECT      N1     3 C6   C2   C8A 
CONECT      C2     3 N1   N2   N3  
CONECT      N2     3 C2   C6A  H2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N9   C5   N3  
CONECT      C6A    4 N2   C7A  H6A1 H6A2
CONECT      C7A    4 C6A  C8A  H7A1 H7A2
CONECT      C8A    4 N1   C7A  H8A1 H8A2
CONECT      HOP2   1 OP2 
CONECT      HOP3   1 OP3 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H8     1 C8  
CONECT      H2     1 N2  
CONECT      H6A1   1 C6A 
CONECT      H6A2   1 C6A 
CONECT      H7A1   1 C7A 
CONECT      H7A2   1 C7A 
CONECT      H8A1   1 C8A 
CONECT      H8A2   1 C8A 
END   
HET    P               44
HETNAM     P   2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE
FORMUL      P      C13 H18 N5 O7 P1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science