Structure based on 1k3x | Ideal structure |
|
Name: pentane-3,4-diol-5-phosphate |
Formula: C5 H13 O6 P |
Weight: 200.127 |
SMILES: "CC[CH](O)[CH](O)CO[P](O)(O)=O" |
Spacial conformation based on PDB
1k3x. Also present in other
14 PDB entries. |
RESIDUE PED 25
CONECT P 4 O1P O2P O3P O5'
CONECT O1P 1 P
CONECT O2P 2 P HOP2
CONECT O3P 2 P HOP3
CONECT O5' 2 P C5'
CONECT C2' 4 C3' C1' H2'1 H2'2
CONECT C5' 4 O5' C4' H5'1 H5'2
CONECT C4' 4 C5' O4' C3' H4'1
CONECT O4' 2 C4' HO'4
CONECT C3' 4 C2' C4' O3' H3'
CONECT C1' 4 C2' H1'1 H1'2 H1'3
CONECT O3' 2 C3' H3T
CONECT HOP2 1 O2P
CONECT HOP3 1 O3P
CONECT H2'1 1 C2'
CONECT H2'2 1 C2'
CONECT H5'1 1 C5'
CONECT H5'2 1 C5'
CONECT H4'1 1 C4'
CONECT HO'4 1 O4'
CONECT H3' 1 C3'
CONECT H1'1 1 C1'
CONECT H1'2 1 C1'
CONECT H1'3 1 C1'
CONECT H3T 1 O3'
END
HET PED 25
HETSYN PED OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
HETNAM PED PENTANE-3,4-DIOL-5-PHOSPHATE
FORMUL PED C5 H13 O6 P1