Structure based on 1z6j

Ideal structure
Name: 5-[amino(imino)methyl]-2-[({[6-[3-amino-5-({[(1r)-1-methylpropyl]amino}carbonyl)phenyl]-3-(isopropylamino)-2-oxopyrazin-1(2h)-yl]acetyl}amino)methyl]-n-pyridin-4-ylbenzamide
Formula: C34 H40 N10 O4
Weight: 652.746
SMILES: "CC[CH](C)NC(=O)c1cc(N)cc(c1)C2=CN=C(NC(C)C)C(=O)N2CC(=O)NCc3ccc(cc3C(=O)Nc4ccncc4)C(N)=N"
Spacial conformation based on PDB 1z6j
RESIDUE   PY3     88
CONECT      C3     3 C4   C2   N7  
CONECT      C4     3 C3   C5   H4  
CONECT      C5     3 C4   N6   H5  
CONECT      C1     3 C2   N6   H1  
CONECT      C2     3 C3   C1   H2  
CONECT      N6     2 C5   C1  
CONECT      N7     3 C3   C8   HN7 
CONECT      C8     3 N7   C9   O10 
CONECT      C9     3 C8   C11  C15 
CONECT      O10    1 C8  
CONECT      C11    3 C9   C12  C19 
CONECT      C12    3 C11  C13  H12 
CONECT      C13    3 C12  C14  H13 
CONECT      C14    3 C13  C15  C16 
CONECT      C15    3 C9   C14  H15 
CONECT      C16    3 C14  N17  N18 
CONECT      N17    2 C16  H17 
CONECT      N18    3 C16  H181 H182
CONECT      C19    4 C11  N20  H191 H192
CONECT      N20    3 C19  C21  H20 
CONECT      C21    3 N20  C22  O24 
CONECT      C22    4 C21  N23  H221 H222
CONECT      N23    3 C22  C25  C29 
CONECT      O24    1 C21 
CONECT      C25    3 N23  C26  O48 
CONECT      C26    3 C25  N27  N31 
CONECT      N27    2 C26  C28 
CONECT      C28    3 N27  C29  H28 
CONECT      C29    3 N23  C28  C30 
CONECT      C30    3 C29  C35  C39 
CONECT      N31    3 C26  C32  H31 
CONECT      C32    4 N31  C33  C34  H32 
CONECT      C33    4 C32  H331 H332 H333
CONECT      C34    4 C32  H341 H342 H343
CONECT      C35    3 C30  C36  H35 
CONECT      C36    3 C35  C37  N40 
CONECT      C37    3 C36  C38  H37 
CONECT      C38    3 C37  C39  C41 
CONECT      C39    3 C30  C38  H39 
CONECT      N40    3 C36  H401 H402
CONECT      C41    3 C38  N42  O46 
CONECT      N42    3 C41  C43  H42 
CONECT      C43    4 N42  C44  C47  H43 
CONECT      C44    4 C43  C45  H441 H442
CONECT      C45    4 C44  H451 H452 H453
CONECT      O46    1 C41 
CONECT      C47    4 C43  H471 H472 H473
CONECT      O48    1 C25 
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      H1     1 C1  
CONECT      H2     1 C2  
CONECT      HN7    1 N7  
CONECT      H12    1 C12 
CONECT      H13    1 C13 
CONECT      H15    1 C15 
CONECT      H17    1 N17 
CONECT      H181   1 N18 
CONECT      H182   1 N18 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H20    1 N20 
CONECT      H221   1 C22 
CONECT      H222   1 C22 
CONECT      H28    1 C28 
CONECT      H31    1 N31 
CONECT      H32    1 C32 
CONECT      H331   1 C33 
CONECT      H332   1 C33 
CONECT      H333   1 C33 
CONECT      H341   1 C34 
CONECT      H342   1 C34 
CONECT      H343   1 C34 
CONECT      H35    1 C35 
CONECT      H37    1 C37 
CONECT      H39    1 C39 
CONECT      H401   1 N40 
CONECT      H402   1 N40 
CONECT      H42    1 N42 
CONECT      H43    1 C43 
CONECT      H441   1 C44 
CONECT      H442   1 C44 
CONECT      H451   1 C45 
CONECT      H452   1 C45 
CONECT      H453   1 C45 
CONECT      H471   1 C47 
CONECT      H472   1 C47 
CONECT      H473   1 C47 
END   
HET    PY3             88
HETNAM     PY3 5-[AMINO(IMINO)METHYL]-2-[({[6-[3-AMINO-5-({[(1R)-1-MET
HETNAM   2 PY3 HYLPROPYL]AMINO}CARBONYL)PHENYL]-3-(ISOPROPYLAMINO)-2-O
HETNAM   3 PY3 XOPYRAZIN-1(2H)-YL]ACETYL}AMINO)METHYL]-N-PYRIDIN-4-YLB
HETNAM   4 PY3 ENZAMIDE
FORMUL      PY3    C34 H40 N10 O4

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science