Structure based on 3zhs

Ideal structure
Name: (4s)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(s)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid
Formula: C16 H25 N4 O10 P2 S
Weight: 527.403
SMILES: "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[CH](O)CCC(O)=O)c(N)n1"
Spacial conformation based on PDB 3zhs.
Also present in other 10 PDB entries.
RESIDUE   TD6     58
CONECT      S1     2 C2   C5  
CONECT      C2     3 S1   N3   C11 
CONECT      N3     3 C2   C4   C7' 
CONECT      C4     3 N3   C5   CM4 
CONECT      C5     3 S1   C4   C6  
CONECT      C6     4 C5   C7   H6   H6A 
CONECT      C7     4 C6   O7   H7   H7A 
CONECT      O7     2 C7   PA  
CONECT      PA     4 O7   O1A  O2A  O3A 
CONECT      PB     4 O1B  O2B  O3A  O3B 
CONECT      N1'    2 C2'  C6' 
CONECT      C11    4 C2   OL1  CLB  H11 
CONECT      C13    4 CLB  CLC  H13  H13A
CONECT      O1A    1 PA  
CONECT      O1B    2 PB   HO1B
CONECT      C2'    3 N1'  N3'  CM2 
CONECT      O2A    2 PA   HO2A
CONECT      O2B    1 PB  
CONECT      N3'    2 C2'  C4' 
CONECT      O3A    2 PA   PB  
CONECT      O3B    2 PB   HO3B
CONECT      C4'    3 N3'  N4'  C5' 
CONECT      N4'    3 C4'  HN4' HN4A
CONECT      C5'    3 C4'  C6'  C7' 
CONECT      C6'    3 N1'  C5'  H6' 
CONECT      C7'    4 N3   C5'  H7'  H7'A
CONECT      OL1    2 C11  HOL1
CONECT      OL2    2 CLC  HOL2
CONECT      OL3    1 CLC 
CONECT      CLB    4 C11  C13  HLB  HLBA
CONECT      CLC    3 C13  OL2  OL3 
CONECT      CM2    4 C2'  HM2  HM2A HM2B
CONECT      CM4    4 C4   HM4  HM4A HM4B
CONECT      H6     1 C6  
CONECT      H6A    1 C6  
CONECT      H7     1 C7  
CONECT      H7A    1 C7  
CONECT      H11    1 C11 
CONECT      H13    1 C13 
CONECT      H13A   1 C13 
CONECT      HO1B   1 O1B 
CONECT      HO2A   1 O2A 
CONECT      HO3B   1 O3B 
CONECT      HN4'   1 N4' 
CONECT      HN4A   1 N4' 
CONECT      H6'    1 C6' 
CONECT      H7'    1 C7' 
CONECT      H7'A   1 C7' 
CONECT      HOL1   1 OL1 
CONECT      HOL2   1 OL2 
CONECT      HLB    1 CLB 
CONECT      HLBA   1 CLB 
CONECT      HM2    1 CM2 
CONECT      HM2A   1 CM2 
CONECT      HM2B   1 CM2 
CONECT      HM4    1 CM4 
CONECT      HM4A   1 CM4 
CONECT      HM4B   1 CM4 
END   
HET    TD6             58
HETNAM     TD6 (4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2
HETNAM   2 TD6 -{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-met
HETNAM   3 TD6 hyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid
FORMUL      TD6    C16 H25 N4 O10 P2 S1 1+

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