Structure based on 2apc

Ideal structure
Name: uridine-diphosphate-methylene-n-acetyl-glucosamine
Formula: C18 H29 N3 O16 P2
Weight: 605.381
SMILES: "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1C[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O"
Spacial conformation based on PDB 2apc.
Also present on 2jlb
RESIDUE   UDM     68
CONECT      C1'    4 C2'  CB   O5'  H1' 
CONECT      C2'    4 C1'  C3'  N2'  H2' 
CONECT      C3'    4 C2'  C4'  O3'  H3' 
CONECT      C4'    4 C3'  C5'  O4'  H4' 
CONECT      C5'    4 C4'  C6'  O5'  H5' 
CONECT      C6'    4 C5'  O6'  H6'1 H6'2
CONECT      C7'    3 C8'  N2'  O7' 
CONECT      C8'    4 C7'  H8'1 H8'2 H8'3
CONECT      N2'    3 C2'  C7'  H3  
CONECT      CB     4 C1'  PB   HB1  HB2 
CONECT      O3'    2 C3'  H4  
CONECT      O4'    2 C4'  H7  
CONECT      O5'    2 C1'  C5' 
CONECT      O6'    2 C6'  H6' 
CONECT      O7'    1 C7' 
CONECT      N1     3 C2   C6   C1D 
CONECT      C2     3 N1   N3   O2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   C5   O4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      O2     1 C2  
CONECT      O4     1 C4  
CONECT      C1D    4 N1   C2D  O4D  H1D 
CONECT      C2D    4 C1D  O2'  C3D  H2D 
CONECT      O2'    2 C2D  H1  
CONECT      C3D    4 C2D  C4D  O3D  H3D 
CONECT      C4D    4 C3D  O4D  C5D  H4D 
CONECT      O4D    2 C1D  C4D 
CONECT      O3D    2 C3D  H2  
CONECT      C5D    4 C4D  O5D  H5'1 H5'2
CONECT      O5D    2 C5D  PA  
CONECT      PA     4 O5D  O1A  O2A  O3A 
CONECT      O1A    1 PA  
CONECT      O2A    2 PA   H2A 
CONECT      O3A    2 PA   PB  
CONECT      PB     4 CB   O3A  O1B  O2B 
CONECT      O1B    1 PB  
CONECT      O2B    2 PB   H2B 
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      H3'    1 C3' 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H6'1   1 C6' 
CONECT      H6'2   1 C6' 
CONECT      H8'1   1 C8' 
CONECT      H8'2   1 C8' 
CONECT      H8'3   1 C8' 
CONECT      H3     1 N2' 
CONECT      HB1    1 CB  
CONECT      HB2    1 CB  
CONECT      H4     1 O3' 
CONECT      H7     1 O4' 
CONECT      H6'    1 O6' 
CONECT      HN3    1 N3  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H1D    1 C1D 
CONECT      H2D    1 C2D 
CONECT      H1     1 O2' 
CONECT      H3D    1 C3D 
CONECT      H4D    1 C4D 
CONECT      H2     1 O3D 
CONECT      H5'1   1 C5D 
CONECT      H5'2   1 C5D 
CONECT      H2A    1 O2A 
CONECT      H2B    1 O2B 
END   
HET    UDM             68
HETSYN     UDM ((2S,3R,4R,5S,6R)-3-ACETAMIDO-4,5-DIHYDROXY-6-(HYDROXYM
HETSYN   2 UDM ETHYL)-TETRAHYDRO-2H-PYRAN-2-YL)METHYLPHOSPHONIC (((2R,
HETSYN   3 UDM 3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3
HETSYN   4 UDM ,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHYL PHOSPHORIC) AN
HETSYN   5 UDM HYDRIDE
HETNAM     UDM URIDINE-DIPHOSPHATE-METHYLENE-N-ACETYL-GLUCOSAMINE
FORMUL      UDM    C18 H29 N3 O16 P2

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science