Structure based on 11ba

Ideal structure
Name: uridylyl-2'-5'-phospho-adenosine
Formula: C19 H24 N7 O12 P
Weight: 573.407
SMILES: "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO)O[CH]4N5C=CC(=O)NC5=O)[CH](O)[CH]3O"
Spacial conformation based on PDB 11ba
RESIDUE   UPA     63
CONECT      N1U    3 C2U  C6U  C1D 
CONECT      C2U    3 N1U  O2U  N3U 
CONECT      O2U    1 C2U 
CONECT      N3U    3 C2U  C4U  H3U 
CONECT      O4U    1 C4U 
CONECT      C4U    3 N3U  O4U  C5U 
CONECT      C5U    3 C4U  C6U  H5U 
CONECT      C6U    3 N1U  C5U  H6U 
CONECT      C5D    4 O5D  C4D  H5U1 H5U2
CONECT      O5D    2 C5D  HOU5
CONECT      C4D    4 C5D  O4D  C3D  H4U'
CONECT      O4D    2 C4D  C1D 
CONECT      C3D    4 C4D  O3D  C2D  H3U'
CONECT      O3D    2 C3D  HOU3
CONECT      C2D    4 C3D  O2D  C1D  H2U'
CONECT      O2D    2 C2D  P   
CONECT      C1D    4 N1U  O4D  C2D  H1U'
CONECT      P      4 O2D  O1P  O2P  O5B 
CONECT      O1P    1 P   
CONECT      O2P    2 P    HOP2
CONECT      O5B    2 P    C5B 
CONECT      C5B    4 O5B  C4B  H5A1 H5A2
CONECT      C4B    4 C5B  O4B  C3B  H4A'
CONECT      O4B    2 C4B  C1B 
CONECT      C3B    4 C4B  O3B  C2B  H3A'
CONECT      O3B    2 C3B  HOA3
CONECT      C2B    4 C3B  O2B  C1B  H2A'
CONECT      O2B    2 C2B  HOA2
CONECT      C1B    4 O4B  C2B  N9A  H1A'
CONECT      N9A    3 C1B  C8A  C4A 
CONECT      C8A    3 N9A  N7A  H8A 
CONECT      N7A    2 C8A  C5A 
CONECT      C6A    3 N6A  C5A  N1A 
CONECT      N6A    3 C6A  H6A1 H6A2
CONECT      C5A    3 N7A  C6A  C4A 
CONECT      C4A    3 N9A  C5A  N3A 
CONECT      N3A    2 C4A  C2A 
CONECT      C2A    3 N3A  N1A  H2A 
CONECT      N1A    2 C6A  C2A 
CONECT      H3U    1 N3U 
CONECT      H5U    1 C5U 
CONECT      H6U    1 C6U 
CONECT      H5U1   1 C5D 
CONECT      H5U2   1 C5D 
CONECT      HOU5   1 O5D 
CONECT      H4U'   1 C4D 
CONECT      H3U'   1 C3D 
CONECT      HOU3   1 O3D 
CONECT      H2U'   1 C2D 
CONECT      H1U'   1 C1D 
CONECT      HOP2   1 O2P 
CONECT      H5A1   1 C5B 
CONECT      H5A2   1 C5B 
CONECT      H4A'   1 C4B 
CONECT      H3A'   1 C3B 
CONECT      HOA3   1 O3B 
CONECT      H2A'   1 C2B 
CONECT      HOA2   1 O2B 
CONECT      H1A'   1 C1B 
CONECT      H8A    1 C8A 
CONECT      H6A1   1 N6A 
CONECT      H6A2   1 N6A 
CONECT      H2A    1 C2A 
END   
HET    UPA             63
HETNAM     UPA URIDYLYL-2'-5'-PHOSPHO-ADENOSINE
FORMUL      UPA    C19 H24 N7 O12 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science