Structure based on 3spy

Ideal structure
Name: 2'-deoxy-5'-o-[(r)-hydroxy{[(r)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]uridine
Formula: C10 H17 N2 O13 P3
Weight: 466.169
SMILES: "O[CH]1C[CH](O[CH]1CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"
Spacial conformation based on PDB 3spy.
Also present on 3spz, 4m28
RESIDUE   UPC     45
CONECT      N1     3 C2   C6   C1' 
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     3 C2   C4   HN3 
CONECT      C4     3 N3   O4   C5  
CONECT      O4     1 C4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      PA     4 O1A  O2A  C3A  O5' 
CONECT      PB     4 O1B  O2B  C3A  O3B 
CONECT      PG     4 O1G  O2G  O3B  O3G 
CONECT      C1'    4 N1   C2'  O4'  H1' 
CONECT      O1A    2 PA   HO1A
CONECT      O1B    2 PB   HO1B
CONECT      O1G    2 PG   HO1G
CONECT      C2'    4 C1'  C3'  H2'  H2'A
CONECT      O2A    1 PA  
CONECT      O2B    1 PB  
CONECT      O2G    1 PG  
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C3A    4 PA   PB   H3A  H3AA
CONECT      O3B    2 PB   PG  
CONECT      O3G    2 PG   HO3G
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H5'  H5'A
CONECT      O5'    2 PA   C5' 
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      H1'    1 C1' 
CONECT      HO1A   1 O1A 
CONECT      HO1B   1 O1B 
CONECT      HO1G   1 O1G 
CONECT      H2'    1 C2' 
CONECT      H2'A   1 C2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H3A    1 C3A 
CONECT      H3AA   1 C3A 
CONECT      HO3G   1 O3G 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H5'A   1 C5' 
CONECT      HN3    1 N3  
HET    UPC             45
HETNAM     UPC 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)ph
HETNAM   2 UPC osphoryl]methyl}phosphoryl]uridine
FORMUL      UPC    C10 H17 N2 O13 P3

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science