Structure based on 3kyd

Ideal structure
Name: 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine
Formula: C13 H21 N7 O5 S
Weight: 387.415
SMILES: "NCCC[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"
Spacial conformation based on PDB 3kyd.
Also present on 6o83
RESIDUE   VMX     47
CONECT      S      4 C1S  O2S  O3S  N5' 
CONECT      N1     2 C2   C6  
CONECT      C2     3 N1   N3   H2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   N9  
CONECT      C5     3 C4   C6   N7  
CONECT      C6     3 N1   C5   N6  
CONECT      N6     3 C6   HN6  HN6A
CONECT      N7     2 C5   C8  
CONECT      C8     3 N7   N9   H8  
CONECT      N9     3 C4   C8   C1' 
CONECT      C1'    4 N9   C2'  O4'  H1' 
CONECT      C10    4 C11  C1S  H10  H10A
CONECT      C11    4 C10  N12  H11  H11A
CONECT      N12    3 C11  HN12 HN1A
CONECT      C1S    4 S    C10  H1S  H1SA
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  HO2'
CONECT      O2S    1 S   
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      O3S    1 S   
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  N5'  H5'  H5'A
CONECT      N5'    3 S    C5'  HN5'
CONECT      H2     1 C2  
CONECT      HN6    1 N6  
CONECT      HN6A   1 N6  
CONECT      H8     1 C8  
CONECT      H1'    1 C1' 
CONECT      H10    1 C10 
CONECT      H10A   1 C10 
CONECT      H11    1 C11 
CONECT      H11A   1 C11 
CONECT      HN12   1 N12 
CONECT      HN1A   1 N12 
CONECT      H1S    1 C1S 
CONECT      H1SA   1 C1S 
CONECT      H2'    1 C2' 
CONECT      HO2'   1 O2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H5'A   1 C5' 
CONECT      HN5'   1 N5' 
END   
HET    VMX             47
HETNAM     VMX 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine
FORMUL      VMX    C13 H21 N7 O5 S1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science