Structure based on 2xnm

Ideal structure
Name: 5-{6-[(1-methylpiperidin-4-yl)oxy]-1h-benzimidazol-1-yl}-3-{(1r)-1-[2-(trifluoromethyl)phenyl]ethoxy}thiophene-2-carboxamide
Formula: C27 H27 F3 N4 O3 S
Weight: 544.588
SMILES: "C[CH](Oc1cc(sc1C(N)=O)n2cnc3ccc(OC4CCN(C)CC4)cc23)c5ccccc5C(F)(F)F"
Spacial conformation based on PDB 2xnm
RESIDUE   WGZ     65
CONECT      C01    4 C02  H011 H012 H013
CONECT      C02    4 C01  O03  C29  H02 
CONECT      O03    2 C02  C04 
CONECT      C04    3 O03  C05  C25 
CONECT      C05    3 C04  C06  H05 
CONECT      C06    3 C05  N07  S24 
CONECT      N07    3 C06  C08  C23 
CONECT      C08    3 N07  N09  H08 
CONECT      N09    2 C08  C10 
CONECT      C10    3 N09  C11  C23 
CONECT      C11    3 C10  C12  H11 
CONECT      C12    3 C11  C13  H12 
CONECT      C13    3 C12  O14  C22 
CONECT      O14    2 C13  C15 
CONECT      C15    4 O14  C16  C21  H15 
CONECT      C16    4 C15  C17  H161 H162
CONECT      C17    4 C16  N18  H171 H172
CONECT      N18    3 C17  C19  C20 
CONECT      C19    4 N18  H191 H192 H193
CONECT      C20    4 N18  C21  H201 H202
CONECT      C21    4 C15  C20  H211 H212
CONECT      C22    3 C13  C23  H22 
CONECT      C23    3 N07  C10  C22 
CONECT      S24    2 C06  C25 
CONECT      C25    3 C04  S24  C26 
CONECT      C26    3 C25  N27  O28 
CONECT      N27    3 C26  H271 H272
CONECT      O28    1 C26 
CONECT      C29    3 C02  C30  C34 
CONECT      C30    3 C29  C31  H30 
CONECT      C31    3 C30  C32  H31 
CONECT      C32    3 C31  C33  H32 
CONECT      C33    3 C32  C34  H33 
CONECT      C34    3 C29  C33  C35 
CONECT      C35    4 C34  F36  F37  F38 
CONECT      F36    1 C35 
CONECT      F37    1 C35 
CONECT      F38    1 C35 
CONECT      H011   1 C01 
CONECT      H012   1 C01 
CONECT      H013   1 C01 
CONECT      H02    1 C02 
CONECT      H05    1 C05 
CONECT      H08    1 C08 
CONECT      H11    1 C11 
CONECT      H12    1 C12 
CONECT      H22    1 C22 
CONECT      H15    1 C15 
CONECT      H161   1 C16 
CONECT      H162   1 C16 
CONECT      H211   1 C21 
CONECT      H212   1 C21 
CONECT      H171   1 C17 
CONECT      H172   1 C17 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H193   1 C19 
CONECT      H201   1 C20 
CONECT      H202   1 C20 
CONECT      H271   1 N27 
CONECT      H272   1 N27 
CONECT      H30    1 C30 
CONECT      H31    1 C31 
CONECT      H32    1 C32 
CONECT      H33    1 C33 
HET    WGZ             65
FORMUL      WGZ    C27 H27 F3 N4 O3 S1

uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science