Structure based on 4v19

Ideal structure
Name: 1-(5-o-phosphono-beta-d-ribofuranosyl)-1,4-dihydropyrimidine
Formula: C9 H15 N2 O7 P
Weight: 294.198
SMILES: "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CCN=C2"
Spacial conformation based on PDB 4v19.
Also present on 5aj3
RESIDUE   Y5P     34
CONECT      OP3    2 P    HP3 
CONECT      P      4 OP3  O5'  OP1  OP2 
CONECT      C5'    4 O5'  C4'  HA1  HB2 
CONECT      O5'    2 P    C5' 
CONECT      C4'    4 C5'  O4'  C3'  HA  
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  HB  
CONECT      O3'    2 C3'  H3' 
CONECT      C2'    4 C3'  O2'  C1'  H2' 
CONECT      O2'    2 C2'  HD  
CONECT      C1'    4 O4'  C2'  N1   HC  
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   N3   H2  
CONECT      N3     2 C2   C4  
CONECT      C4     4 N3   C5   H4   H4A 
CONECT      C6     3 N1   C5   H6  
CONECT      OP1    1 P   
CONECT      OP2    2 P    HP2 
CONECT      C5     3 C4   C6   H5  
CONECT      HP3    1 OP3 
CONECT      HP2    1 OP2 
CONECT      HA1    1 C5' 
CONECT      HB2    1 C5' 
CONECT      HA     1 C4' 
CONECT      HB     1 C3' 
CONECT      HC     1 C1' 
CONECT      H2'    1 C2' 
CONECT      HD     1 O2' 
CONECT      H2     1 C2  
CONECT      H6     1 C6  
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      H4A    1 C4  
CONECT      H3'    1 O3' 
END   
HET    Y5P             34
HETSYN     Y5P PYRIMIDINE RIBOSIDE-5'-MONOPHOSPHATE
HETNAM     Y5P 1-(5-O-phosphono-beta-D-ribofuranosyl)-1,4-dihydropyrim
HETNAM   2 Y5P idine
FORMUL      Y5P    C9 H15 N2 O7 P1

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science