Structure based on 4v19 | Ideal structure |
|
Name: 1-(5-o-phosphono-beta-d-ribofuranosyl)-1,4-dihydropyrimidine |
Formula: C9 H15 N2 O7 P |
Weight: 294.198 |
SMILES: "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CCN=C2" |
Spacial conformation based on PDB
4v19. Also present on 5aj3 |
RESIDUE Y5P 34
CONECT OP3 2 P HP3
CONECT P 4 OP3 O5' OP1 OP2
CONECT C5' 4 O5' C4' HA1 HB2
CONECT O5' 2 P C5'
CONECT C4' 4 C5' O4' C3' HA
CONECT O4' 2 C4' C1'
CONECT C3' 4 C4' O3' C2' HB
CONECT O3' 2 C3' H3'
CONECT C2' 4 C3' O2' C1' H2'
CONECT O2' 2 C2' HD
CONECT C1' 4 O4' C2' N1 HC
CONECT N1 3 C1' C2 C6
CONECT C2 3 N1 N3 H2
CONECT N3 2 C2 C4
CONECT C4 4 N3 C5 H4 H4A
CONECT C6 3 N1 C5 H6
CONECT OP1 1 P
CONECT OP2 2 P HP2
CONECT C5 3 C4 C6 H5
CONECT HP3 1 OP3
CONECT HP2 1 OP2
CONECT HA1 1 C5'
CONECT HB2 1 C5'
CONECT HA 1 C4'
CONECT HB 1 C3'
CONECT HC 1 C1'
CONECT H2' 1 C2'
CONECT HD 1 O2'
CONECT H2 1 C2
CONECT H6 1 C6
CONECT H4 1 C4
CONECT H5 1 C5
CONECT H4A 1 C4
CONECT H3' 1 O3'
END
HET Y5P 34
HETSYN Y5P PYRIMIDINE RIBOSIDE-5'-MONOPHOSPHATE
HETNAM Y5P 1-(5-O-phosphono-beta-D-ribofuranosyl)-1,4-dihydropyrim
HETNAM 2 Y5P idine
FORMUL Y5P C9 H15 N2 O7 P1