Structure based on 1evv | Ideal structure |
|
Name: wybutosine |
Formula: C21 H29 N6 O12 P |
Weight: 588.462 |
SMILES: "COC(=O)N[CH](CCc1n2C(=O)c3ncn([CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O)c3N(C)c2nc1C)C(=O)OC" |
Spacial conformation based on PDB
1evv. Also present in other
17 PDB entries. |
RESIDUE YG 69
CONECT N1 3 C2 C6 C12
CONECT N2 2 C2 C11
CONECT C2 3 N1 N2 N3
CONECT N3 3 C2 C3 C4
CONECT C3 4 N3 H31 H32 H33
CONECT C4 3 N3 C5 N9
CONECT C5 3 C4 C6 N7
CONECT C6 3 N1 C5 O6
CONECT O6 1 C6
CONECT N7 2 C5 C8
CONECT C8 3 N7 N9 H8
CONECT N9 3 C4 C8 C1'
CONECT C10 4 C11 H101 H102 H103
CONECT C11 3 N2 C10 C12
CONECT C12 3 N1 C11 C13
CONECT C13 4 C12 C14 H131 H132
CONECT C14 4 C13 C15 H141 H142
CONECT C15 4 C14 C16 N20 H15
CONECT C16 3 C15 O17 O18
CONECT O17 1 C16
CONECT O18 2 C16 C19
CONECT C19 4 O18 H191 H192 H193
CONECT N20 3 C15 C21 HN2
CONECT C21 3 N20 O22 O23
CONECT O22 1 C21
CONECT O23 2 C21 C24
CONECT C24 4 O23 H241 H242 H243
CONECT C1' 4 N9 C2' O4' H1'
CONECT C2' 4 C1' O2' C3' H2'
CONECT O2' 2 C2' HO2'
CONECT C3' 4 C2' O3' C4' H3'
CONECT O3' 2 C3' HO3'
CONECT C4' 4 C3' O4' C5' H4'
CONECT O4' 2 C1' C4'
CONECT C5' 4 C4' O5' H5' H5''
CONECT O5' 2 C5' P
CONECT P 4 O5' OP1 OP2 OP3
CONECT OP1 1 P
CONECT OP2 2 P HOP2
CONECT OP3 2 P HOP3
CONECT H31 1 C3
CONECT H32 1 C3
CONECT H33 1 C3
CONECT H8 1 C8
CONECT H101 1 C10
CONECT H102 1 C10
CONECT H103 1 C10
CONECT H131 1 C13
CONECT H132 1 C13
CONECT H141 1 C14
CONECT H142 1 C14
CONECT H15 1 C15
CONECT H191 1 C19
CONECT H192 1 C19
CONECT H193 1 C19
CONECT HN2 1 N20
CONECT H241 1 C24
CONECT H242 1 C24
CONECT H243 1 C24
CONECT H1' 1 C1'
CONECT H2' 1 C2'
CONECT HO2' 1 O2'
CONECT H3' 1 C3'
CONECT HO3' 1 O3'
CONECT H4' 1 C4'
CONECT H5' 1 C5'
CONECT H5'' 1 C5'
CONECT HOP2 1 OP2
CONECT HOP3 1 OP3
END
HET YG 69
HETSYN YG Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4,9
HETSYN 2 YG -DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL-9-
HETSYN 3 YG OXO-METHYL ESTER
HETNAM YG WYBUTOSINE
FORMUL YG C21 H29 N6 O12 P1