Structure based on 1evv

Ideal structure
Name: wybutosine
Formula: C21 H29 N6 O12 P
Weight: 588.462
SMILES: "COC(=O)N[CH](CCc1n2C(=O)c3ncn([CH]4O[CH](CO[P](O)(O)=O)[CH](O)[CH]4O)c3N(C)c2nc1C)C(=O)OC"
Spacial conformation based on PDB 1evv.
Also present in other 17 PDB entries.
RESIDUE   YG      69
CONECT      N1     3 C2   C6   C12 
CONECT      N2     2 C2   C11 
CONECT      C2     3 N1   N2   N3  
CONECT      N3     3 C2   C3   C4  
CONECT      C3     4 N3   H31  H32  H33 
CONECT      C4     3 N3   C5   N9  
CONECT      C5     3 C4   C6   N7  
CONECT      C6     3 N1   C5   O6  
CONECT      O6     1 C6  
CONECT      N7     2 C5   C8  
CONECT      C8     3 N7   N9   H8  
CONECT      N9     3 C4   C8   C1' 
CONECT      C10    4 C11  H101 H102 H103
CONECT      C11    3 N2   C10  C12 
CONECT      C12    3 N1   C11  C13 
CONECT      C13    4 C12  C14  H131 H132
CONECT      C14    4 C13  C15  H141 H142
CONECT      C15    4 C14  C16  N20  H15 
CONECT      C16    3 C15  O17  O18 
CONECT      O17    1 C16 
CONECT      O18    2 C16  C19 
CONECT      C19    4 O18  H191 H192 H193
CONECT      N20    3 C15  C21  HN2 
CONECT      C21    3 N20  O22  O23 
CONECT      O22    1 C21 
CONECT      O23    2 C21  C24 
CONECT      C24    4 O23  H241 H242 H243
CONECT      C1'    4 N9   C2'  O4'  H1' 
CONECT      C2'    4 C1'  O2'  C3'  H2' 
CONECT      O2'    2 C2'  HO2'
CONECT      C3'    4 C2'  O3'  C4'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C4'    4 C3'  O4'  C5'  H4' 
CONECT      O4'    2 C1'  C4' 
CONECT      C5'    4 C4'  O5'  H5'  H5''
CONECT      O5'    2 C5'  P   
CONECT      P      4 O5'  OP1  OP2  OP3 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      OP3    2 P    HOP3
CONECT      H31    1 C3  
CONECT      H32    1 C3  
CONECT      H33    1 C3  
CONECT      H8     1 C8  
CONECT      H101   1 C10 
CONECT      H102   1 C10 
CONECT      H103   1 C10 
CONECT      H131   1 C13 
CONECT      H132   1 C13 
CONECT      H141   1 C14 
CONECT      H142   1 C14 
CONECT      H15    1 C15 
CONECT      H191   1 C19 
CONECT      H192   1 C19 
CONECT      H193   1 C19 
CONECT      HN2    1 N20 
CONECT      H241   1 C24 
CONECT      H242   1 C24 
CONECT      H243   1 C24 
CONECT      H1'    1 C1' 
CONECT      H2'    1 C2' 
CONECT      HO2'   1 O2' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H4'    1 C4' 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      HOP2   1 OP2 
CONECT      HOP3   1 OP3 
END   
HET    YG              69
HETSYN     YG  Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4,9
HETSYN   2 YG  -DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL-9-
HETSYN   3 YG  OXO-METHYL ESTER
HETNAM     YG  WYBUTOSINE
FORMUL      YG     C21 H29 N6 O12 P1

This OCA MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science