Hetgroup: Z

Structure based on 1m0e

Ideal structure

Name: 1-(2-deoxy-5-o-phosphono-beta-d-erythro-pentofuranosyl)pyrimidin-2(1h)-one

Formula: C9 H13 N2 O7 P

Weight: 292.182

SMILES: "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=CC=NC2=O"

Spacial conformation based on PDB 1m0e.
Also present on 2wb2, 2wq7, 6f57

RESIDUE   Z       32
CONECT      P      4 OP1  OP2  O5'  OP3 
CONECT      OP1    1 P   
CONECT      OP2    2 P    HOP2
CONECT      O5'    2 P    C5' 
CONECT      C5'    4 O5'  C4'  H5'  H5''
CONECT      C4'    4 C5'  O4'  C3'  H4' 
CONECT      O4'    2 C4'  C1' 
CONECT      C3'    4 C4'  O3'  C2'  H3' 
CONECT      O3'    2 C3'  HO3'
CONECT      C2'    4 C3'  C1'  H2'  H2''
CONECT      C1'    4 O4'  C2'  N1   H1' 
CONECT      N1     3 C1'  C2   C6  
CONECT      C2     3 N1   O2   N3  
CONECT      O2     1 C2  
CONECT      N3     2 C2   C4  
CONECT      C4     3 N3   C5   H4  
CONECT      C5     3 C4   C6   H5  
CONECT      C6     3 N1   C5   H6  
CONECT      OP3    2 P    HOP3
CONECT      HOP2   1 OP2 
CONECT      H5'    1 C5' 
CONECT      H5''   1 C5' 
CONECT      H4'    1 C4' 
CONECT      H3'    1 C3' 
CONECT      HO3'   1 O3' 
CONECT      H2'    1 C2' 
CONECT      H2''   1 C2' 
CONECT      H1'    1 C1' 
CONECT      H4     1 C4  
CONECT      H5     1 C5  
CONECT      H6     1 C6  
CONECT      HOP3   1 OP3 
END   
HET    Z               32
HETSYN     Z   2'-DEOXYZEBULARINE-5'-MONOPHOSPHATE
HETNAM     Z   1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)
HETNAM   2 Z   PYRIMIDIN-2(1H)-ONE
FORMUL      Z      C9 H13 N2 O7 P1

This OCA

MONOMER page
uses Jmol, developed by the Jmol Development Team (color reference)