Structure based on 3r7y

Ideal structure
Name: 2-{[(2-aminopyrimidin-5-yl)methyl]amino}-4-(morpholin-4-yl)-5-nitrobenzamide
Formula: C16 H19 N7 O4
Weight: 373.367
SMILES: "NC(=O)c1cc(c(cc1NCc2cnc(N)nc2)N3CCOCC3)[N+]([O-])=O"
Spacial conformation based on PDB 3r7y
RESIDUE   Z04     46
CONECT      N01    3 C11  C16  HN01
CONECT      N02    3 C15  HN02 HN0A
CONECT      N03    2 C18  C19 
CONECT      N04    2 C19  C20 
CONECT      N05    3 C13  C21  C23 
CONECT      N06    3 C19  HN06 HN0B
CONECT      N07    3 C14  O27  O28 
CONECT      C08    3 C09  C14  H08 
CONECT      C09    3 C08  C11  C15 
CONECT      C11    3 N01  C09  C12 
CONECT      C12    3 C11  C13  H12 
CONECT      C13    3 N05  C12  C14 
CONECT      C14    3 N07  C08  C13 
CONECT      C15    3 N02  C09  O25 
CONECT      C16    4 N01  C17  H16  H16A
CONECT      C17    3 C16  C18  C20 
CONECT      C18    3 N03  C17  H18 
CONECT      C19    3 N03  N04  N06 
CONECT      C20    3 N04  C17  H20 
CONECT      C21    4 N05  C22  H21  H21A
CONECT      C22    4 C21  O26  H22  H22A
CONECT      C23    4 N05  C24  H23  H23A
CONECT      C24    4 C23  O26  H24  H24A
CONECT      O25    1 C15 
CONECT      O26    2 C22  C24 
CONECT      O27    1 N07 
CONECT      O28    1 N07 
CONECT      HN01   1 N01 
CONECT      HN02   1 N02 
CONECT      HN0A   1 N02 
CONECT      HN06   1 N06 
CONECT      HN0B   1 N06 
CONECT      H08    1 C08 
CONECT      H12    1 C12 
CONECT      H16    1 C16 
CONECT      H16A   1 C16 
CONECT      H18    1 C18 
CONECT      H20    1 C20 
CONECT      H21    1 C21 
CONECT      H21A   1 C21 
CONECT      H22    1 C22 
CONECT      H22A   1 C22 
CONECT      H23    1 C23 
CONECT      H23A   1 C23 
CONECT      H24    1 C24 
CONECT      H24A   1 C24 
END   
HET    Z04             46
HETNAM     Z04 2-{[(2-aminopyrimidin-5-yl)methyl]amino}-4-(morpholin-4
HETNAM   2 Z04 -yl)-5-nitrobenzamide
FORMUL      Z04    C16 H19 N7 O4

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uses Jmol, developed by the Jmol Development Team (color reference)
OCA© by Jaime Prilusky, 1996-2004,2006,2010,2014
Bioinformatics Unit
Weizmann Institute of Science