PDB Full entry for 1A1D HEADER NUCLEOTIDYLTRANSFERASE 10-DEC-97 1A1D TITLE YEAST RNA POLYMERASE SUBUNIT RPB8, NMR, MINIMIZED AVERAGE STRUCTURE, TITLE 2 ALPHA CARBONS ONLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUBUNIT RPB8; COMPND 5 EC: 2.7.7.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS RPB8, RNA POLYMERASE, OB FOLD, EUKARYOTIC, YEAST, KEYWDS 2 NUCLEOTIDYLTRANSFERASE EXPDTA SOLUTION NMR MDLTYP CA ATOMS ONLY, CHAIN A AUTHOR S.KRAPP,G.KELLY,J.REISCHL,R.WEINZIERL,S.MATTHEWS REVDAT 4 10-APR-24 1A1D 1 REMARK REVDAT 3 24-FEB-09 1A1D 1 VERSN REVDAT 2 20-APR-99 1A1D 1 COMPND REMARK TITLE EXPDTA REVDAT 2 2 1 KEYWDS REVDAT 1 02-MAR-99 1A1D 0 JRNL AUTH S.KRAPP,G.KELLY,J.REISCHL,R.O.WEINZIERL,S.MATTHEWS JRNL TITL EUKARYOTIC RNA POLYMERASE SUBUNIT RPB8 IS A NEW RELATIVE OF JRNL TITL 2 THE OB FAMILY. JRNL REF NAT.STRUCT.BIOL. V. 5 110 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9461075 JRNL DOI 10.1038/NSB0298-110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170271. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 1A1D A 1 146 UNP P20436 RPB8_YEAST 1 146 SEQRES 1 A 146 MET SER ASN THR LEU PHE ASP ASP ILE PHE GLN VAL SER SEQRES 2 A 146 GLU VAL ASP PRO GLY ARG TYR ASN LYS VAL CYS ARG ILE SEQRES 3 A 146 GLU ALA ALA SER THR THR GLN ASP GLN CYS LYS LEU THR SEQRES 4 A 146 LEU ASP ILE ASN VAL GLU LEU PHE PRO VAL ALA ALA GLN SEQRES 5 A 146 ASP SER LEU THR VAL THR ILE ALA SER SER LEU ASN LEU SEQRES 6 A 146 GLU ASP THR PRO ALA ASN ASP SER SER ALA THR ARG SER SEQRES 7 A 146 TRP ARG PRO PRO GLN ALA GLY ASP ARG SER LEU ALA ASP SEQRES 8 A 146 ASP TYR ASP TYR VAL MET TYR GLY THR ALA TYR LYS PHE SEQRES 9 A 146 GLU GLU VAL SER LYS ASP LEU ILE ALA VAL TYR TYR SER SEQRES 10 A 146 PHE GLY GLY LEU LEU MET ARG LEU GLU GLY ASN TYR ARG SEQRES 11 A 146 ASN LEU ASN ASN LEU LYS GLN GLU ASN ALA TYR LEU LEU SEQRES 12 A 146 ILE ARG ARG HELIX 1 1 LEU A 63 LEU A 65 5 3 HELIX 2 2 ALA A 90 TYR A 93 1 4 HELIX 3 3 ARG A 130 LEU A 132 5 3 SHEET 1 A 4 ASP A 7 PHE A 10 0 SHEET 2 A 4 LEU A 55 THR A 58 -1 SHEET 3 A 4 TYR A 141 ILE A 144 -1 SHEET 4 A 4 TYR A 95 TYR A 98 -1 SHEET 1 B 4 CYS A 24 ALA A 29 0 SHEET 2 B 4 LYS A 37 ILE A 42 -1 SHEET 3 B 4 LEU A 122 GLY A 127 -1 SHEET 4 B 4 ILE A 112 SER A 117 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ATOM 1 CA MET A 1 11.361 -16.028 -20.309 1.00 7.92 C ATOM 2 CA SER A 2 8.922 -15.650 -17.391 1.00 5.45 C ATOM 3 CA ASN A 3 8.666 -11.989 -18.462 1.00 4.14 C ATOM 4 CA THR A 4 4.956 -12.136 -19.365 1.00 2.87 C ATOM 5 CA LEU A 5 3.708 -10.024 -16.436 1.00 2.21 C ATOM 6 CA PHE A 6 1.689 -6.999 -17.660 1.00 1.63 C ATOM 7 CA ASP A 7 3.504 -3.795 -18.685 1.00 1.80 C ATOM 8 CA ASP A 8 1.572 -1.441 -20.990 1.00 1.68 C ATOM 9 CA ILE A 9 1.718 2.359 -21.344 1.00 1.58 C ATOM 10 CA PHE A 10 -1.726 4.011 -21.475 1.00 1.23 C ATOM 11 CA GLN A 11 -2.339 7.437 -23.046 1.00 1.34 C ATOM 12 CA VAL A 12 -5.815 8.892 -22.627 1.00 1.96 C ATOM 13 CA SER A 13 -8.153 11.373 -20.926 1.00 1.27 C ATOM 14 CA GLU A 14 -9.417 9.823 -17.656 1.00 1.90 C ATOM 15 CA VAL A 15 -12.268 11.715 -16.002 1.00 2.18 C ATOM 16 CA ASP A 16 -15.131 11.151 -13.528 1.00 2.71 C ATOM 17 CA PRO A 17 -18.502 12.916 -13.856 1.00 4.34 C ATOM 18 CA GLY A 18 -19.298 12.267 -10.172 1.00 4.61 C ATOM 19 CA ARG A 19 -17.616 15.168 -8.334 1.00 5.43 C ATOM 20 CA TYR A 20 -20.991 15.704 -6.616 1.00 5.00 C ATOM 21 CA ASN A 21 -19.318 13.877 -3.707 1.00 4.47 C ATOM 22 CA LYS A 22 -15.524 13.674 -4.065 1.00 3.46 C ATOM 23 CA VAL A 23 -14.685 10.200 -5.424 1.00 2.48 C ATOM 24 CA CYS A 24 -12.404 10.272 -8.493 1.00 2.04 C ATOM 25 CA ARG A 25 -12.308 7.939 -11.514 1.00 1.76 C ATOM 26 CA ILE A 26 -9.337 7.465 -13.854 1.00 1.72 C ATOM 27 CA GLU A 27 -10.690 5.741 -16.986 1.00 1.18 C ATOM 28 CA ALA A 28 -7.989 5.335 -19.644 1.00 0.95 C ATOM 29 CA ALA A 29 -8.158 3.520 -22.989 1.00 0.99 C ATOM 30 CA SER A 30 -5.132 1.460 -24.089 1.00 1.93 C ATOM 31 CA THR A 31 -3.838 2.236 -27.578 1.00 1.85 C ATOM 32 CA THR A 32 -0.631 1.013 -29.272 1.00 3.08 C ATOM 33 CA GLN A 33 -3.076 -1.081 -31.394 1.00 3.67 C ATOM 34 CA ASP A 34 -6.441 -0.826 -29.568 1.00 2.69 C ATOM 35 CA GLN A 35 -7.434 -3.809 -27.398 1.00 1.85 C ATOM 36 CA CYS A 36 -6.530 -3.057 -23.753 1.00 1.36 C ATOM 37 CA LYS A 37 -8.667 -1.002 -21.326 1.00 0.95 C ATOM 38 CA LEU A 38 -7.741 0.237 -17.828 1.00 0.64 C ATOM 39 CA THR A 39 -9.182 2.647 -15.292 1.00 0.88 C ATOM 40 CA LEU A 40 -8.827 3.639 -11.614 1.00 1.36 C ATOM 41 CA ASP A 41 -11.803 4.597 -9.410 1.00 1.78 C ATOM 42 CA ILE A 42 -10.241 6.331 -6.386 1.00 2.03 C ATOM 43 CA ASN A 43 -9.963 9.707 -4.619 1.00 2.22 C ATOM 44 CA VAL A 44 -6.423 9.903 -3.200 1.00 3.05 C ATOM 45 CA GLU A 45 -4.992 12.127 -5.949 1.00 3.51 C ATOM 46 CA LEU A 46 -7.111 13.659 -8.674 1.00 3.51 C ATOM 47 CA PHE A 47 -3.828 14.158 -10.564 1.00 2.51 C ATOM 48 CA PRO A 48 -5.135 17.025 -12.720 1.00 3.15 C ATOM 49 CA VAL A 49 -1.565 17.836 -13.827 1.00 2.36 C ATOM 50 CA ALA A 50 -1.925 15.856 -17.079 1.00 2.44 C ATOM 51 CA ALA A 51 -0.242 12.472 -16.426 1.00 2.72 C ATOM 52 CA GLN A 52 -3.664 11.112 -17.428 1.00 2.11 C ATOM 53 CA ASP A 53 -2.812 12.053 -21.022 1.00 1.44 C ATOM 54 CA SER A 54 0.040 9.519 -20.933 1.00 1.34 C ATOM 55 CA LEU A 55 -0.188 7.238 -17.898 1.00 1.28 C ATOM 56 CA THR A 56 1.467 3.798 -17.690 1.00 1.43 C ATOM 57 CA VAL A 57 0.775 0.699 -15.566 1.00 1.35 C ATOM 58 CA THR A 58 2.940 -2.377 -14.889 1.00 1.66 C ATOM 59 CA ILE A 59 1.937 -5.509 -12.944 1.00 1.66 C ATOM 60 CA ALA A 60 5.206 -7.468 -12.716 1.00 2.22 C ATOM 61 CA SER A 61 6.748 -9.410 -9.809 1.00 2.69 C ATOM 62 CA SER A 62 10.415 -8.353 -9.791 1.00 3.61 C ATOM 63 CA LEU A 63 9.629 -4.729 -10.724 1.00 2.92 C ATOM 64 CA ASN A 64 9.940 -4.173 -6.959 1.00 4.22 C ATOM 65 CA LEU A 65 13.661 -4.968 -7.234 1.00 4.98 C ATOM 66 CA GLU A 66 13.929 -4.716 -11.010 1.00 4.97 C ATOM 67 CA ASP A 67 14.906 -8.376 -10.724 1.00 6.16 C ATOM 68 CA THR A 68 18.348 -6.978 -9.924 1.00 7.05 C ATOM 69 CA PRO A 69 20.395 -10.090 -10.754 1.00 8.17 C ATOM 70 CA ALA A 70 23.190 -9.035 -8.369 1.00 8.96 C ATOM 71 CA ASN A 71 22.970 -7.430 -4.913 1.00 8.89 C ATOM 72 CA ASP A 72 26.429 -6.871 -3.461 1.00 8.40 C ATOM 73 CA SER A 73 25.761 -3.328 -2.291 1.00 8.46 C ATOM 74 CA SER A 74 23.654 -4.095 0.793 1.00 8.75 C ATOM 75 CA ALA A 75 21.131 -1.390 1.761 1.00 9.66 C ATOM 76 CA THR A 76 22.900 0.712 4.413 1.00 9.25 C ATOM 77 CA ARG A 77 22.476 3.814 2.248 1.00 9.50 C ATOM 78 CA SER A 78 25.329 5.591 0.438 1.00 9.48 C ATOM 79 CA TRP A 79 27.271 3.788 -2.307 1.00 9.99 C ATOM 80 CA ARG A 80 25.857 5.235 -5.530 1.00 9.66 C ATOM 81 CA PRO A 81 22.786 7.506 -5.334 1.00 8.63 C ATOM 82 CA PRO A 82 19.735 5.377 -6.228 1.00 8.99 C ATOM 83 CA GLN A 83 17.648 8.490 -6.877 1.00 8.55 C ATOM 84 CA ALA A 84 16.110 6.732 -9.840 1.00 8.57 C ATOM 85 CA GLY A 85 15.060 3.772 -7.688 1.00 7.03 C ATOM 86 CA ASP A 86 18.527 2.322 -8.366 1.00 6.10 C ATOM 87 CA ARG A 87 18.430 3.473 -11.990 1.00 4.25 C ATOM 88 CA SER A 88 15.446 1.169 -12.447 1.00 2.87 C ATOM 89 CA LEU A 89 13.137 1.621 -15.459 1.00 3.27 C ATOM 90 CA ALA A 90 9.947 2.861 -13.764 1.00 2.71 C ATOM 91 CA ASP A 91 11.898 5.626 -11.992 1.00 2.53 C ATOM 92 CA ASP A 92 12.922 6.986 -15.414 1.00 2.73 C ATOM 93 CA TYR A 93 9.243 7.533 -16.295 1.00 2.34 C ATOM 94 CA ASP A 94 8.431 10.318 -13.811 1.00 2.36 C ATOM 95 CA TYR A 95 5.675 9.520 -11.295 1.00 2.23 C ATOM 96 CA VAL A 96 5.828 5.873 -10.168 1.00 2.34 C ATOM 97 CA MET A 97 3.487 4.572 -7.442 1.00 2.38 C ATOM 98 CA TYR A 98 2.941 1.128 -5.873 1.00 2.42 C ATOM 99 CA GLY A 99 -0.244 -0.985 -5.913 1.00 2.00 C ATOM 100 CA THR A 100 -1.439 -4.593 -5.484 1.00 2.00 C ATOM 101 CA ALA A 101 -3.936 -7.006 -7.084 1.00 1.72 C ATOM 102 CA TYR A 102 -7.049 -8.337 -5.311 1.00 1.99 C ATOM 103 CA LYS A 103 -9.829 -9.572 -7.613 1.00 1.82 C ATOM 104 CA PHE A 104 -9.442 -11.088 -11.096 1.00 1.54 C ATOM 105 CA GLU A 105 -12.354 -12.219 -13.296 1.00 1.84 C ATOM 106 CA GLU A 106 -12.975 -12.782 -17.025 1.00 2.05 C ATOM 107 CA VAL A 107 -16.016 -11.254 -18.753 1.00 2.88 C ATOM 108 CA SER A 108 -16.924 -10.873 -22.442 1.00 3.92 C ATOM 109 CA LYS A 109 -14.911 -12.974 -24.916 1.00 4.05 C ATOM 110 CA ASP A 110 -11.105 -13.029 -25.345 1.00 3.05 C ATOM 111 CA LEU A 111 -11.302 -9.664 -23.557 1.00 2.00 C ATOM 112 CA ILE A 112 -11.175 -10.260 -19.772 1.00 1.59 C ATOM 113 CA ALA A 113 -11.063 -7.640 -16.981 1.00 1.28 C ATOM 114 CA VAL A 114 -9.259 -7.595 -13.609 1.00 1.19 C ATOM 115 CA TYR A 115 -9.455 -5.231 -10.604 1.00 1.42 C ATOM 116 CA TYR A 116 -8.066 -4.805 -7.066 1.00 1.65 C ATOM 117 CA SER A 117 -9.577 -3.144 -3.975 1.00 2.12 C ATOM 118 CA PHE A 118 -7.963 -1.788 -0.788 1.00 2.59 C ATOM 119 CA GLY A 119 -10.919 -0.244 1.079 1.00 2.75 C ATOM 120 CA GLY A 120 -11.899 2.729 -1.113 1.00 2.58 C ATOM 121 CA LEU A 121 -9.560 3.039 -4.118 1.00 2.11 C ATOM 122 CA LEU A 122 -10.424 0.440 -6.784 1.00 2.31 C ATOM 123 CA MET A 123 -8.409 -0.281 -9.952 1.00 1.52 C ATOM 124 CA ARG A 124 -9.550 -2.299 -12.994 1.00 1.25 C ATOM 125 CA LEU A 125 -8.158 -3.356 -16.396 1.00 0.88 C ATOM 126 CA GLU A 126 -9.214 -5.484 -19.398 1.00 1.11 C ATOM 127 CA GLY A 127 -6.829 -7.267 -21.786 1.00 1.36 C ATOM 128 CA ASN A 128 -5.491 -10.823 -22.306 1.00 1.65 C ATOM 129 CA TYR A 129 -5.690 -13.622 -19.708 1.00 2.59 C ATOM 130 CA ARG A 130 -2.570 -15.822 -19.643 1.00 2.39 C ATOM 131 CA ASN A 131 -0.756 -12.636 -18.587 1.00 3.42 C ATOM 132 CA LEU A 132 -2.759 -12.851 -15.335 1.00 3.44 C ATOM 133 CA ASN A 133 -1.644 -16.450 -14.651 1.00 2.16 C ATOM 134 CA ASN A 134 1.181 -14.807 -12.680 1.00 2.00 C ATOM 135 CA LEU A 135 -1.140 -12.157 -11.197 1.00 2.00 C ATOM 136 CA LYS A 136 -2.360 -14.914 -8.837 1.00 2.33 C ATOM 137 CA GLN A 137 0.133 -13.265 -6.458 1.00 2.37 C ATOM 138 CA GLU A 138 2.121 -10.083 -7.171 1.00 2.39 C ATOM 139 CA ASN A 139 2.060 -6.270 -6.954 1.00 2.15 C ATOM 140 CA ALA A 140 1.206 -3.660 -9.611 1.00 1.84 C ATOM 141 CA TYR A 141 2.925 -0.249 -9.726 1.00 2.03 C ATOM 142 CA LEU A 142 1.658 2.820 -11.619 1.00 1.86 C ATOM 143 CA LEU A 143 3.972 4.989 -13.750 1.00 1.90 C ATOM 144 CA ILE A 144 2.499 8.237 -15.110 1.00 1.73 C ATOM 145 CA ARG A 145 4.323 10.663 -17.428 1.00 2.02 C ATOM 146 CA ARG A 146 3.311 13.663 -19.567 1.00 2.03 C TER 147 ARG A 146 MASTER 63 0 0 3 8 0 0 6 146 1 0 12 END