PDB Short entry for 1A66 HEADER TRANSCRIPTION/DNA 06-MAR-98 1A66 TITLE SOLUTION NMR STRUCTURE OF THE CORE NFATC1/DNA COMPLEX, 18 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*GP*GP*AP*AP*AP*AP*TP*TP*G)-3'); COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: 12MER DNA CONTAINING MURINE ARRE2 SITE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*AP*AP*TP*TP*TP*TP*CP*CP*TP*CP*G)-3'); COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: 12MER DNA CONTAINING MURINE ARRE2 SITE; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CORE NFATC1; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: DNA BINDING DOMAIN OF NFATC1; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 CELL_LINE: BL21; SOURCE 10 GENE: NFATC1(416-591); SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PLM1-NFATC1(416-591); SOURCE 16 EXPRESSION_SYSTEM_GENE: NFATC1(416-591) KEYWDS NFATC1/DNA, REL, NFAT/DNA, ARRE2, NFAT, NFATC1, NFATC, NFAT2, BINARY KEYWDS 2 COMPLEX, TRANSCRIPTION FACTOR, ENHANCEOSOME, IL-2, COMPLEX, BINARY, KEYWDS 3 TRANSCRIPTION-DNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR P.ZHOU,L.J.SUN,V.DOETSCH,G.WAGNER,G.L.VERDINE REVDAT 3 03-NOV-21 1A66 1 REMARK SEQADV REVDAT 2 24-FEB-09 1A66 1 VERSN REVDAT 1 17-JUN-98 1A66 0 JRNL AUTH P.ZHOU,L.J.SUN,V.DOTSCH,G.WAGNER,G.L.VERDINE JRNL TITL SOLUTION STRUCTURE OF THE CORE NFATC1/DNA COMPLEX. JRNL REF CELL(CAMBRIDGE,MASS.) V. 92 687 1998 JRNL REFN ISSN 0092-8674 JRNL PMID 9506523 JRNL DOI 10.1016/S0092-8674(00)81136-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 FOLLOWING REFERENCE: ZHOU ET AL. (1998). "SOLUTION STRUCTURE OF REMARK 3 THE CORE NFATC1/DNA COMPLEX". CELL, 1998, 92(5), 687-696. REMARK 4 REMARK 4 1A66 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170441. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : REF. ZHOU ET AL.; CELL; 1998; REMARK 210 92(5); 687-696 REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX500; VARIAN INOVA 500; VARIAN REMARK 210 UNITY PLUS 750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA-1.4, X-PLOR 3.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 18 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : NOE VIOLATION <= 0.4 ANGSTROM, REMARK 210 DIHEDRAL ANGLE VIOLATION <= 5 REMARK 210 DEGREE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC B 315 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DG B 316 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DG B 316 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DG B 316 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 DA B 317 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DA B 317 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DG B 318 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DG B 318 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 DG B 318 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DG B 319 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DG B 319 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG B 319 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 DA B 320 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DA B 320 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA B 321 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA B 321 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DA B 322 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DA B 322 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA B 323 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DA B 323 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DT B 324 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DT B 325 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DG B 326 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DG B 326 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 1 DG B 326 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 DC C 340 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 1 DA C 341 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DA C 341 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DA C 342 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DA C 342 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DT C 343 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DT C 343 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 DT C 344 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DT C 344 C6 - C5 - C7 ANGL. DEV. = -3.8 DEGREES REMARK 500 1 DT C 345 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 DT C 346 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DC C 347 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DC C 348 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DT C 349 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC C 350 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DG C 351 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DG C 351 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 DG C 351 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 DC B 315 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DG B 316 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 DG B 316 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 DG B 316 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 DA B 317 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 DA B 317 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 DG B 318 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 787 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 6 65.76 171.94 REMARK 500 1 HIS A 9 166.73 63.12 REMARK 500 1 GLU A 18 -108.24 -81.63 REMARK 500 1 ARG A 28 -159.32 -79.53 REMARK 500 1 SER A 34 -50.86 -163.03 REMARK 500 1 ARG A 35 -153.04 -112.35 REMARK 500 1 ALA A 37 -148.88 -171.94 REMARK 500 1 ALA A 42 -71.45 -122.97 REMARK 500 1 TYR A 53 94.98 -58.84 REMARK 500 1 LEU A 54 45.39 -109.35 REMARK 500 1 THR A 67 158.56 -42.46 REMARK 500 1 ASP A 70 -92.28 -90.11 REMARK 500 1 ARG A 71 -82.59 -89.89 REMARK 500 1 ALA A 77 -99.01 -70.80 REMARK 500 1 PHE A 78 36.91 -152.08 REMARK 500 1 ILE A 84 117.57 -178.88 REMARK 500 1 THR A 85 124.30 168.76 REMARK 500 1 LYS A 87 3.26 -66.81 REMARK 500 1 VAL A 89 82.13 -61.35 REMARK 500 1 SER A 99 91.61 -54.40 REMARK 500 1 PRO A 110 -73.01 -73.08 REMARK 500 1 GLU A 111 60.09 -111.35 REMARK 500 1 ALA A 116 78.01 -157.56 REMARK 500 1 ASP A 119 28.67 -154.16 REMARK 500 1 ARG A 127 101.44 -47.12 REMARK 500 1 LYS A 135 147.68 62.34 REMARK 500 1 ILE A 140 86.10 -52.22 REMARK 500 1 THR A 145 53.20 -92.12 REMARK 500 1 SER A 159 -53.33 -166.93 REMARK 500 1 ARG A 161 134.94 178.79 REMARK 500 2 TRP A 4 70.71 63.68 REMARK 500 2 PRO A 7 -86.56 -74.70 REMARK 500 2 HIS A 9 171.81 -55.62 REMARK 500 2 SER A 10 67.08 -110.16 REMARK 500 2 GLU A 18 -104.13 -74.85 REMARK 500 2 PRO A 21 -158.23 -77.69 REMARK 500 2 SER A 23 40.52 -101.49 REMARK 500 2 ARG A 28 -148.21 -80.01 REMARK 500 2 ALA A 37 44.69 -92.40 REMARK 500 2 VAL A 38 57.12 -119.57 REMARK 500 2 ALA A 42 -133.67 -94.86 REMARK 500 2 THR A 67 154.13 -42.07 REMARK 500 2 ARG A 71 -132.87 -90.56 REMARK 500 2 HIS A 76 146.04 -39.89 REMARK 500 2 ALA A 77 -93.98 -83.48 REMARK 500 2 PHE A 78 40.92 -151.95 REMARK 500 2 HIS A 82 -94.32 -116.38 REMARK 500 2 ILE A 84 80.78 -151.46 REMARK 500 2 LYS A 87 -93.10 -120.27 REMARK 500 2 THR A 88 105.49 169.58 REMARK 500 REMARK 500 THIS ENTRY HAS 654 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1A66 A 1 178 UNP O95644 NFAC1_HUMAN 414 591 DBREF 1A66 B 315 326 PDB 1A66 1A66 315 326 DBREF 1A66 C 340 351 PDB 1A66 1A66 340 351 SEQADV 1A66 MET A 1 UNP O95644 ALA 414 ENGINEERED MUTATION SEQADV 1A66 LYS A 2 UNP O95644 LEU 415 ENGINEERED MUTATION SEQADV 1A66 ARG A 28 UNP O95644 HIS 441 ENGINEERED MUTATION SEQRES 1 B 12 DC DG DA DG DG DA DA DA DA DT DT DG SEQRES 1 C 12 DC DA DA DT DT DT DT DC DC DT DC DG SEQRES 1 A 178 MET LYS ASP TRP GLN LEU PRO SER HIS SER GLY PRO TYR SEQRES 2 A 178 GLU LEU ARG ILE GLU VAL GLN PRO LYS SER HIS HIS ARG SEQRES 3 A 178 ALA ARG TYR GLU THR GLU GLY SER ARG GLY ALA VAL LYS SEQRES 4 A 178 ALA SER ALA GLY GLY HIS PRO ILE VAL GLN LEU HIS GLY SEQRES 5 A 178 TYR LEU GLU ASN GLU PRO LEU MET LEU GLN LEU PHE ILE SEQRES 6 A 178 GLY THR ALA ASP ASP ARG LEU LEU ARG PRO HIS ALA PHE SEQRES 7 A 178 TYR GLN VAL HIS ARG ILE THR GLY LYS THR VAL SER THR SEQRES 8 A 178 THR SER HIS GLU ALA ILE LEU SER ASN THR LYS VAL LEU SEQRES 9 A 178 GLU ILE PRO LEU LEU PRO GLU ASN SER MET ARG ALA VAL SEQRES 10 A 178 ILE ASP CYS ALA GLY ILE LEU LYS LEU ARG ASN SER ASP SEQRES 11 A 178 ILE GLU LEU ARG LYS GLY GLU THR ASP ILE GLY ARG LYS SEQRES 12 A 178 ASN THR ARG VAL ARG LEU VAL PHE ARG VAL HIS VAL PRO SEQRES 13 A 178 GLN PRO SER GLY ARG THR LEU SER LEU GLN VAL ALA SER SEQRES 14 A 178 ASN PRO ILE GLU CYS SER GLN ARG SER HELIX 1 ALA ASN A 128 GLU A 132 1 5 SHEET 1 S1 3 LEU A 15 GLN A 20 0 SHEET 2 S1 3 ILE A 47 HIS A 51 -1 SHEET 3 S1 3 ARG A 115 ASP A 119 -1 SHEET 1 S2 5 SER A 93 LEU A 98 0 SHEET 2 S2 5 LYS A 102 LEU A 108 -1 SHEET 3 S2 5 LEU A 59 GLY A 66 -1 SHEET 4 S2 5 ARG A 146 VAL A 155 -1 SHEET 5 S2 5 LEU A 165 ASN A 170 -1 SHEET 1 S3 2 GLN A 80 HIS A 82 0 SHEET 2 S3 2 ALA A 121 LEU A 124 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000