PDB Short entry for 1A67 HEADER PROTEINASE INHIBITOR 06-MAR-98 1A67 TITLE CHICKEN EGG WHITE CYSTATIN WILDTYPE, NMR, 16 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATIN; COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: PHOSPHORYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: EGG; SOURCE 6 CELL: EGG; SOURCE 7 CELLULAR_LOCATION: CYTOPLASM (WHITE) KEYWDS PROTEINASE INHIBITOR, THIOL PROTEINASE, STEFFINS, KININOGENS EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR T.DIECKMANN,L.MITSCHANG,M.HOFMANN,J.KOS,V.TURK,E.A.AUERSWALD, AUTHOR 2 R.JAENICKE,H.OSCHKINAT REVDAT 3 16-FEB-22 1A67 1 REMARK REVDAT 2 24-FEB-09 1A67 1 VERSN REVDAT 1 27-MAY-98 1A67 0 JRNL AUTH T.DIECKMANN,L.MITSCHANG,M.HOFMANN,J.KOS,V.TURK, JRNL AUTH 2 E.A.AUERSWALD,R.JAENICKE,H.OSCHKINAT JRNL TITL THE STRUCTURES OF NATIVE PHOSPHORYLATED CHICKEN CYSTATIN AND JRNL TITL 2 OF A RECOMBINANT UNPHOSPHORYLATED VARIANT IN SOLUTION. JRNL REF J.MOL.BIOL. V. 234 1048 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8263912 JRNL DOI 10.1006/JMBI.1993.1658 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.A.ENGH,T.DIECKMANN,W.BODE,E.A.AUERSWALD,V.TURK,R.HUBER, REMARK 1 AUTH 2 H.OSCHKINAT REMARK 1 TITL CONFORMATIONAL VARIABILITY OF CHICKEN CYSTATIN. COMPARISON REMARK 1 TITL 2 OF STRUCTURES DETERMINED BY X-RAY DIFFRACTION AND NMR REMARK 1 TITL 3 SPECTROSCOPY REMARK 1 REF J.MOL.BIOL. V. 234 1060 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 1A67 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170442. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY; 3D TOCSY REMARK 210 -NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX 500; AMX 600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST OVERALL ENERGY AND REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-16 REMARK 470 RES CSSEQI ATOMS REMARK 470 GLN A 116 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 37 -90.65 38.26 REMARK 500 1 ASP A 38 -160.97 -53.35 REMARK 500 1 SER A 41 -27.94 97.54 REMARK 500 1 ARG A 43 139.15 -171.55 REMARK 500 1 VAL A 45 -75.56 -120.26 REMARK 500 1 SER A 49 177.39 173.68 REMARK 500 1 VAL A 55 66.26 -157.01 REMARK 500 1 SER A 56 -54.72 94.72 REMARK 500 1 THR A 69 177.73 179.39 REMARK 500 1 LYS A 73 -138.50 62.50 REMARK 500 1 SER A 74 -83.04 -69.02 REMARK 500 1 ASP A 77 -165.56 -110.44 REMARK 500 1 LEU A 78 -175.64 48.05 REMARK 500 1 GLN A 79 -108.09 -126.32 REMARK 500 1 SER A 80 -91.78 30.79 REMARK 500 1 CYS A 81 150.13 68.37 REMARK 500 1 GLU A 82 159.76 158.43 REMARK 500 1 PHE A 83 46.58 -82.98 REMARK 500 1 HIS A 84 85.40 69.32 REMARK 500 1 ASP A 85 -138.11 86.56 REMARK 500 1 LYS A 91 78.79 53.21 REMARK 500 1 ILE A 102 106.22 -162.39 REMARK 500 1 LEU A 105 17.72 -149.51 REMARK 500 1 ASN A 106 74.23 80.73 REMARK 500 1 ILE A 108 123.02 166.11 REMARK 500 1 GLU A 112 -174.72 174.43 REMARK 500 1 LYS A 114 87.03 -60.91 REMARK 500 2 ASN A 37 -91.97 26.42 REMARK 500 2 ASP A 38 -164.43 -53.50 REMARK 500 2 SER A 49 175.05 176.29 REMARK 500 2 VAL A 55 68.28 -161.52 REMARK 500 2 SER A 56 -51.29 89.21 REMARK 500 2 LYS A 73 -164.82 77.04 REMARK 500 2 SER A 74 -91.73 -75.52 REMARK 500 2 SER A 75 32.17 -159.04 REMARK 500 2 ASP A 77 173.98 83.95 REMARK 500 2 LEU A 78 173.46 54.46 REMARK 500 2 GLN A 79 -76.36 -118.53 REMARK 500 2 SER A 80 -147.48 60.96 REMARK 500 2 CYS A 81 -177.56 66.42 REMARK 500 2 PHE A 83 42.37 -82.41 REMARK 500 2 HIS A 84 88.46 81.35 REMARK 500 2 ASP A 85 -102.56 76.84 REMARK 500 2 GLU A 86 63.85 -165.90 REMARK 500 2 LYS A 91 87.31 52.21 REMARK 500 2 LEU A 105 22.98 -158.93 REMARK 500 2 ASN A 106 -82.39 177.34 REMARK 500 2 GLN A 107 -169.57 164.03 REMARK 500 2 GLU A 112 -170.90 168.82 REMARK 500 3 VAL A 14 132.71 -35.06 REMARK 500 REMARK 500 THIS ENTRY HAS 388 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 23 0.32 SIDE CHAIN REMARK 500 1 ARG A 34 0.29 SIDE CHAIN REMARK 500 1 ARG A 43 0.20 SIDE CHAIN REMARK 500 1 ARG A 46 0.31 SIDE CHAIN REMARK 500 1 ARG A 68 0.31 SIDE CHAIN REMARK 500 2 ARG A 23 0.28 SIDE CHAIN REMARK 500 2 ARG A 34 0.16 SIDE CHAIN REMARK 500 2 ARG A 43 0.15 SIDE CHAIN REMARK 500 2 ARG A 46 0.29 SIDE CHAIN REMARK 500 2 ARG A 52 0.26 SIDE CHAIN REMARK 500 2 ARG A 68 0.23 SIDE CHAIN REMARK 500 3 ARG A 23 0.17 SIDE CHAIN REMARK 500 3 ARG A 34 0.25 SIDE CHAIN REMARK 500 3 ARG A 43 0.18 SIDE CHAIN REMARK 500 3 ARG A 46 0.11 SIDE CHAIN REMARK 500 3 ARG A 52 0.20 SIDE CHAIN REMARK 500 3 ARG A 68 0.30 SIDE CHAIN REMARK 500 4 ARG A 23 0.28 SIDE CHAIN REMARK 500 4 ARG A 34 0.20 SIDE CHAIN REMARK 500 4 ARG A 43 0.19 SIDE CHAIN REMARK 500 4 ARG A 46 0.13 SIDE CHAIN REMARK 500 4 ARG A 68 0.31 SIDE CHAIN REMARK 500 5 ARG A 23 0.19 SIDE CHAIN REMARK 500 5 ARG A 34 0.09 SIDE CHAIN REMARK 500 5 ARG A 46 0.30 SIDE CHAIN REMARK 500 5 ARG A 52 0.21 SIDE CHAIN REMARK 500 5 ARG A 68 0.18 SIDE CHAIN REMARK 500 6 ARG A 23 0.14 SIDE CHAIN REMARK 500 6 ARG A 34 0.30 SIDE CHAIN REMARK 500 6 ARG A 46 0.29 SIDE CHAIN REMARK 500 6 ARG A 52 0.26 SIDE CHAIN REMARK 500 6 ARG A 68 0.28 SIDE CHAIN REMARK 500 7 ARG A 23 0.31 SIDE CHAIN REMARK 500 7 ARG A 34 0.32 SIDE CHAIN REMARK 500 7 ARG A 43 0.20 SIDE CHAIN REMARK 500 7 ARG A 46 0.25 SIDE CHAIN REMARK 500 7 ARG A 52 0.21 SIDE CHAIN REMARK 500 7 ARG A 68 0.28 SIDE CHAIN REMARK 500 8 ARG A 23 0.32 SIDE CHAIN REMARK 500 8 ARG A 34 0.23 SIDE CHAIN REMARK 500 8 ARG A 43 0.32 SIDE CHAIN REMARK 500 8 ARG A 46 0.10 SIDE CHAIN REMARK 500 8 ARG A 52 0.31 SIDE CHAIN REMARK 500 8 ARG A 68 0.24 SIDE CHAIN REMARK 500 9 ARG A 23 0.18 SIDE CHAIN REMARK 500 9 ARG A 34 0.14 SIDE CHAIN REMARK 500 9 ARG A 43 0.29 SIDE CHAIN REMARK 500 9 ARG A 46 0.12 SIDE CHAIN REMARK 500 9 ARG A 52 0.31 SIDE CHAIN REMARK 500 9 ARG A 68 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 89 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1A67 A 9 116 UNP P01038 CYT_CHICK 32 139 SEQRES 1 A 108 GLY ALA PRO VAL PRO VAL ASP GLU ASN ASP GLU GLY LEU SEQRES 2 A 108 GLN ARG ALA LEU GLN PHE ALA MET ALA GLU TYR ASN ARG SEQRES 3 A 108 ALA SER ASN ASP LYS TYR SER SER ARG VAL VAL ARG VAL SEQRES 4 A 108 ILE SER ALA LYS ARG GLN LEU VAL SER GLY ILE LYS TYR SEQRES 5 A 108 ILE LEU GLN VAL GLU ILE GLY ARG THR THR CYS PRO LYS SEQRES 6 A 108 SER SER GLY ASP LEU GLN SER CYS GLU PHE HIS ASP GLU SEQRES 7 A 108 PRO GLU MET ALA LYS TYR THR THR CYS THR PHE VAL VAL SEQRES 8 A 108 TYR SER ILE PRO TRP LEU ASN GLN ILE LYS LEU LEU GLU SEQRES 9 A 108 SER LYS CYS GLN HELIX 1 1 GLU A 19 ALA A 35 5 17 SHEET 1 A 4 ALA A 50 VAL A 55 0 SHEET 2 A 4 GLY A 57 ILE A 66 -1 N ILE A 61 O LYS A 51 SHEET 3 A 4 THR A 93 ILE A 102 -1 N SER A 101 O ILE A 58 SHEET 4 A 4 GLN A 107 LEU A 110 -1 N LYS A 109 O TYR A 100 SHEET 1 B 2 ARG A 43 VAL A 47 0 SHEET 2 B 2 VAL A 64 GLY A 67 -1 N GLY A 67 O ARG A 43 SSBOND 1 CYS A 71 CYS A 81 1555 1555 2.02 SSBOND 2 CYS A 95 CYS A 115 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000