PDB Short entry for 1A7R HEADER IMMUNOGLOBULIN 16-MAR-98 1A7R TITLE FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) TITLE 2 VARIANT CHAIN L GLU81->ASP COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-KAPPA D1.3 FV (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FV FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IGG1-KAPPA D1.3 FV (HEAVY CHAIN); COMPND 9 CHAIN: H; COMPND 10 FRAGMENT: FV FRAGMENT; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 VARIANT: CHAIN L, E81D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 VARIANT: CHAIN L, E81D; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MARKS,K.HENRICK,G.WINTER REVDAT 3 02-AUG-23 1A7R 1 REMARK SEQADV REVDAT 2 24-FEB-09 1A7R 1 VERSN REVDAT 1 29-APR-98 1A7R 0 JRNL AUTH C.MARKS,K.HENRICK,G.WINTER JRNL TITL X-RAY STRUCTURES OF D1.3 FV MUTANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.N.BHAT,G.A.BENTLEY,G.BOULOT,M.I.GREENE,D.TELLO, REMARK 1 AUTH 2 W.DALL'ACQUA,H.SOUCHON,F.P.SCHWARZ,R.A.MARIUZZA,R.J.POLJAK REMARK 1 TITL BOUND WATER MOLECULES AND CONFORMATIONAL STABILIZATION HELP REMARK 1 TITL 2 MEDIATE AN ANTIGEN-ANTIBODY ASSOCIATION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 1089 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.N.BHAT,G.A.BENTLEY,T.O.FISCHMANN,G.BOULOT,R.J.POLJAK REMARK 1 TITL SMALL REARRANGEMENTS IN STRUCTURES OF FV AND FAB FRAGMENTS REMARK 1 TITL 2 OF ANTIBODY D1.3 ON ANTIGEN BINDING REMARK 1 REF NATURE V. 347 483 1990 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCP4 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1700 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 14719 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.050 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.051 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.016 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.145 ; 0.120 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.164 ; 0.200 REMARK 3 MULTIPLE TORSION (A) : 0.176 ; 0.200 REMARK 3 H-BOND (X...Y) (A) : 0.138 ; 0.200 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 2.610 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 19.100; 20.000 REMARK 3 TRANSVERSE (DEGREES) : 13.800; 15.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.305 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.520 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.584 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1A7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : DEC-92 REMARK 200 TEMPERATURE (KELVIN) : 269 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, AGROVATA/ROTAVATA REMARK 200 DATA SCALING SOFTWARE : AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 13.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 (ALMN) REMARK 200 STARTING MODEL: PDB ENTRY 1VFA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.11750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.12250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.12250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.17625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.12250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.12250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.05875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.12250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.12250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.17625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.12250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.12250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 14.05875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.11750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE ANTIBODY IS SECRETED INTO PERIPLASMIC SPACE. VH AND VL REMARK 400 DOMAINS ARE COVALENTLY LINKED AND THEY ASSOCIATE REMARK 400 SPONTANEOUSLY. CHAIN IDENTIFIER *L* STANDS FOR LIGHT-CHAIN REMARK 400 RESIDUES, *H* FOR HEAVY-CHAIN RESIDUES. THE NUMBERING REMARK 400 SYSTEM USED IN THIS ENTRY IS SEQUENTIAL, FROM 1 - 107 FOR REMARK 400 THE LIGHT CHAIN AND FROM 201 - 316 FOR THE HEAVY CHAIN. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 ASP L 56 CG OD1 OD2 REMARK 470 ASP H 300 CG OD1 OD2 REMARK 470 SER H 316 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN L 70 CB GLN L 70 CG -0.451 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 1 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP L 1 CB - CG - OD2 ANGL. DEV. = -13.7 DEGREES REMARK 500 SER L 10 N - CA - CB ANGL. DEV. = 10.3 DEGREES REMARK 500 TYR L 49 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG L 61 CD - NE - CZ ANGL. DEV. = 55.3 DEGREES REMARK 500 GLN L 70 N - CA - CB ANGL. DEV. = -15.4 DEGREES REMARK 500 GLN L 70 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 TYR L 71 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR L 86 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG L 96 NH1 - CZ - NH2 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG L 96 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG L 96 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 GLU L 105 OE1 - CD - OE2 ANGL. DEV. = 13.7 DEGREES REMARK 500 GLU L 105 CG - CD - OE2 ANGL. DEV. = -12.7 DEGREES REMARK 500 GLN H 201 CA - C - O ANGL. DEV. = 14.1 DEGREES REMARK 500 GLU H 206 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 LEU H 218 CB - CG - CD1 ANGL. DEV. = 12.7 DEGREES REMARK 500 SER H 225 N - CA - CB ANGL. DEV. = 9.3 DEGREES REMARK 500 SER H 228 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 SER H 228 CA - CB - OG ANGL. DEV. = -17.1 DEGREES REMARK 500 ASP H 254 CB - CG - OD1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP H 254 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP H 258 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP H 258 CB - CG - OD2 ANGL. DEV. = 9.9 DEGREES REMARK 500 TYR H 259 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG H 266 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG H 266 NE - CZ - NH2 ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU H 267 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 SER H 284 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP H 289 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG H 292 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG H 292 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR H 294 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TYR H 294 CB - CG - CD1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG H 299 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 TYR H 301 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG H 302 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP H 304 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 51 -51.38 66.90 REMARK 500 SER L 77 80.52 34.64 REMARK 500 SER L 93 -137.07 51.42 REMARK 500 SER H 215 -12.38 74.19 REMARK 500 SER H 284 84.24 24.22 REMARK 500 ASP H 300 70.86 47.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 1A7R L 1 107 UNP P01635 KV5C_MOUSE 1 108 DBREF 1A7R H 201 316 UNP P01820 HV44_MOUSE 133 248 SEQADV 1A7R VAL L 3 UNP P01635 GLU 3 CONFLICT SEQADV 1A7R TYR L 50 UNP P01635 LYS 50 CONFLICT SEQADV 1A7R THR L 51 UNP P01635 ALA 51 CONFLICT SEQADV 1A7R THR L 52 UNP P01635 GLN 52 CONFLICT SEQADV 1A7R ASP L 81 UNP P01635 GLU 81 VARIANT SEQADV 1A7R L UNP P01635 PRO 95 DELETION SEQADV 1A7R ARG L 96 UNP P01635 TRP 97 CONFLICT SEQADV 1A7R LEU H 312 UNP P01820 VAL 244 CONFLICT SEQRES 1 L 107 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU SER ALA SEQRES 2 L 107 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 107 GLY ASN ILE HIS ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 107 GLN GLY LYS SER PRO GLN LEU LEU VAL TYR TYR THR THR SEQRES 5 L 107 THR LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 107 GLY SER GLY THR GLN TYR SER LEU LYS ILE ASN SER LEU SEQRES 7 L 107 GLN PRO ASP ASP PHE GLY SER TYR TYR CYS GLN HIS PHE SEQRES 8 L 107 TRP SER THR PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 107 GLU ILE LYS SEQRES 1 H 116 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 116 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 116 PHE SER LEU THR GLY TYR GLY VAL ASN TRP VAL ARG GLN SEQRES 4 H 116 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY MET ILE TRP SEQRES 5 H 116 GLY ASP GLY ASN THR ASP TYR ASN SER ALA LEU LYS SER SEQRES 6 H 116 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 H 116 PHE LEU LYS MET ASN SER LEU HIS THR ASP ASP THR ALA SEQRES 8 H 116 ARG TYR TYR CYS ALA ARG GLU ARG ASP TYR ARG LEU ASP SEQRES 9 H 116 TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER FORMUL 3 HOH *111(H2 O) HELIX 1 1 PRO L 80 ASP L 82 5 3 HELIX 2 2 LYS H 264 ARG H 266 5 3 HELIX 3 3 THR H 287 ASP H 289 5 3 SHEET 1 A 4 LEU L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 N ARG L 24 O THR L 5 SHEET 3 A 4 GLN L 70 ILE L 75 -1 N ILE L 75 O VAL L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 67 O GLN L 70 SHEET 1 B 5 SER L 10 ALA L 13 0 SHEET 2 B 5 THR L 102 ILE L 106 1 N LYS L 103 O LEU L 11 SHEET 3 B 5 GLY L 84 HIS L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 5 LEU L 33 GLN L 38 -1 N GLN L 38 O SER L 85 SHEET 5 B 5 GLN L 45 VAL L 48 -1 N VAL L 48 O TRP L 35 SHEET 1 C 4 GLN H 203 SER H 207 0 SHEET 2 C 4 LEU H 218 SER H 225 -1 N SER H 225 O GLN H 203 SHEET 3 C 4 GLN H 277 MET H 282 -1 N MET H 282 O LEU H 218 SHEET 4 C 4 LEU H 267 ASP H 272 -1 N ASP H 272 O GLN H 277 SHEET 1 D 5 THR H 310 LEU H 312 0 SHEET 2 D 5 ALA H 291 GLU H 298 -1 N TYR H 293 O THR H 310 SHEET 3 D 5 GLY H 233 GLN H 239 -1 N GLN H 239 O ARG H 292 SHEET 4 D 5 LEU H 245 ILE H 251 -1 N ILE H 251 O VAL H 234 SHEET 5 D 5 THR H 257 TYR H 259 -1 N ASP H 258 O MET H 250 SHEET 1 E 2 ALA H 296 GLU H 298 0 SHEET 2 E 2 LEU H 303 TRP H 306 -1 N TYR H 305 O ARG H 297 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 2 CYS H 222 CYS H 295 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -0.35 CISPEP 2 THR L 94 PRO L 95 0 -1.90 CRYST1 90.245 90.245 56.235 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011081 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011081 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017783 0.00000