PDB Short entry for 1AB3 HEADER RIBOSOMAL PROTEIN 03-FEB-97 1AB3 TITLE RIBOSOMAL PROTEIN S15 FROM THERMUS THERMOPHILUS, NMR, 26 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA BINDING PROTEIN S15; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS RIBOSOMAL PROTEIN, RNA-BINDING PROTEIN, RRNA-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 26 AUTHOR H.BERGLUND,A.RAK,A.SERGANOV,M.GARBER,T.HARD REVDAT 3 16-FEB-22 1AB3 1 REMARK REVDAT 2 24-FEB-09 1AB3 1 VERSN REVDAT 1 01-APR-97 1AB3 0 JRNL AUTH H.BERGLUND,A.RAK,A.SERGANOV,M.GARBER,T.HARD JRNL TITL SOLUTION STRUCTURE OF THE RIBOSOMAL RNA BINDING PROTEIN S15 JRNL TITL 2 FROM THERMUS THERMOPHILUS. JRNL REF NAT.STRUCT.BIOL. V. 4 20 1997 JRNL REFN ISSN 1072-8368 JRNL PMID 8989316 JRNL DOI 10.1038/NSB0197-20 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DETAILS IN THE JRNL CITATION ABOVE REMARK 4 REMARK 4 1AB3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170609. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HETERONUCLEAR EXPERIMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N LABELLED S15. IONIC_STRENGTH: 200 MM REMARK 210 LICL, 20 MM KH2PO4 PRESSURE: 1 ATM SOLVENT SYSTEM: 90/10 % H2O/ REMARK 210 D2O REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 2 -98.61 -63.29 REMARK 500 1 THR A 3 -110.00 165.31 REMARK 500 1 LYS A 9 33.27 175.97 REMARK 500 1 VAL A 10 -75.62 -90.12 REMARK 500 1 GLN A 12 -32.86 -38.40 REMARK 500 1 SER A 23 174.80 -51.27 REMARK 500 1 VAL A 44 -39.74 -158.72 REMARK 500 1 HIS A 45 -176.59 -50.49 REMARK 500 1 LYS A 46 33.33 176.35 REMARK 500 1 LYS A 47 71.98 164.67 REMARK 500 1 ASP A 48 58.80 178.49 REMARK 500 1 HIS A 49 -170.14 -54.08 REMARK 500 1 SER A 51 -168.02 -54.25 REMARK 500 1 ARG A 53 92.66 -52.33 REMARK 500 1 LEU A 55 31.56 -89.80 REMARK 500 1 ARG A 62 -38.34 -152.05 REMARK 500 1 ARG A 64 33.79 -154.46 REMARK 500 1 TYR A 68 -74.63 -112.79 REMARK 500 1 ASP A 73 116.24 165.87 REMARK 500 1 TYR A 77 36.32 -87.27 REMARK 500 1 ARG A 78 27.33 -156.04 REMARK 500 1 ALA A 79 -66.64 -129.92 REMARK 500 1 LEU A 84 -61.40 -145.57 REMARK 500 1 ILE A 86 -85.32 -87.73 REMARK 500 1 ARG A 87 -124.30 -94.22 REMARK 500 2 THR A 3 -162.88 -175.58 REMARK 500 2 LYS A 4 -77.14 -55.61 REMARK 500 2 LYS A 9 39.95 174.19 REMARK 500 2 VAL A 10 -71.95 -90.23 REMARK 500 2 GLN A 12 -33.38 -39.21 REMARK 500 2 ASP A 20 35.05 -91.05 REMARK 500 2 SER A 23 -173.62 -59.59 REMARK 500 2 HIS A 41 -76.80 -89.07 REMARK 500 2 VAL A 44 -40.25 -159.42 REMARK 500 2 HIS A 45 -175.28 -55.46 REMARK 500 2 HIS A 49 106.08 62.43 REMARK 500 2 HIS A 52 -32.23 172.34 REMARK 500 2 LEU A 55 -161.61 -56.65 REMARK 500 2 TYR A 68 -0.95 69.87 REMARK 500 2 ASP A 73 106.73 175.44 REMARK 500 2 TYR A 77 41.14 -82.75 REMARK 500 2 ARG A 78 31.31 -147.23 REMARK 500 2 ALA A 79 -60.90 -131.98 REMARK 500 2 LEU A 84 -76.46 -140.75 REMARK 500 2 ILE A 86 -115.63 -88.92 REMARK 500 2 ARG A 87 -127.24 -129.56 REMARK 500 3 LYS A 4 -85.78 -41.22 REMARK 500 3 GLN A 12 -34.77 -38.86 REMARK 500 3 ARG A 16 30.34 -92.60 REMARK 500 3 HIS A 41 -72.80 -86.94 REMARK 500 REMARK 500 THIS ENTRY HAS 588 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 16 0.13 SIDE CHAIN REMARK 500 1 ARG A 34 0.27 SIDE CHAIN REMARK 500 1 ARG A 37 0.32 SIDE CHAIN REMARK 500 1 ARG A 53 0.32 SIDE CHAIN REMARK 500 1 ARG A 62 0.30 SIDE CHAIN REMARK 500 1 ARG A 63 0.32 SIDE CHAIN REMARK 500 1 ARG A 64 0.20 SIDE CHAIN REMARK 500 1 ARG A 67 0.28 SIDE CHAIN REMARK 500 1 ARG A 71 0.28 SIDE CHAIN REMARK 500 1 ARG A 76 0.27 SIDE CHAIN REMARK 500 1 ARG A 78 0.22 SIDE CHAIN REMARK 500 1 ARG A 87 0.26 SIDE CHAIN REMARK 500 2 ARG A 16 0.22 SIDE CHAIN REMARK 500 2 ARG A 34 0.30 SIDE CHAIN REMARK 500 2 ARG A 37 0.23 SIDE CHAIN REMARK 500 2 ARG A 53 0.19 SIDE CHAIN REMARK 500 2 ARG A 62 0.29 SIDE CHAIN REMARK 500 2 ARG A 63 0.19 SIDE CHAIN REMARK 500 2 ARG A 64 0.31 SIDE CHAIN REMARK 500 2 ARG A 67 0.24 SIDE CHAIN REMARK 500 2 ARG A 71 0.24 SIDE CHAIN REMARK 500 2 ARG A 76 0.23 SIDE CHAIN REMARK 500 2 ARG A 78 0.27 SIDE CHAIN REMARK 500 2 ARG A 87 0.31 SIDE CHAIN REMARK 500 3 ARG A 16 0.14 SIDE CHAIN REMARK 500 3 ARG A 34 0.25 SIDE CHAIN REMARK 500 3 ARG A 37 0.26 SIDE CHAIN REMARK 500 3 ARG A 53 0.31 SIDE CHAIN REMARK 500 3 ARG A 62 0.20 SIDE CHAIN REMARK 500 3 ARG A 63 0.32 SIDE CHAIN REMARK 500 3 ARG A 64 0.28 SIDE CHAIN REMARK 500 3 ARG A 67 0.23 SIDE CHAIN REMARK 500 3 ARG A 71 0.21 SIDE CHAIN REMARK 500 3 ARG A 76 0.30 SIDE CHAIN REMARK 500 3 ARG A 78 0.30 SIDE CHAIN REMARK 500 3 ARG A 87 0.25 SIDE CHAIN REMARK 500 4 ARG A 16 0.23 SIDE CHAIN REMARK 500 4 ARG A 34 0.22 SIDE CHAIN REMARK 500 4 ARG A 37 0.22 SIDE CHAIN REMARK 500 4 ARG A 53 0.31 SIDE CHAIN REMARK 500 4 ARG A 62 0.29 SIDE CHAIN REMARK 500 4 ARG A 63 0.32 SIDE CHAIN REMARK 500 4 ARG A 64 0.30 SIDE CHAIN REMARK 500 4 ARG A 67 0.32 SIDE CHAIN REMARK 500 4 ARG A 71 0.22 SIDE CHAIN REMARK 500 4 ARG A 76 0.11 SIDE CHAIN REMARK 500 4 ARG A 78 0.30 SIDE CHAIN REMARK 500 4 ARG A 87 0.27 SIDE CHAIN REMARK 500 5 ARG A 16 0.18 SIDE CHAIN REMARK 500 5 ARG A 34 0.25 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 308 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1AB3 A 1 88 UNP P80378 RS15_THETH 1 88 SEQRES 1 A 88 PRO ILE THR LYS GLU GLU LYS GLN LYS VAL ILE GLN GLU SEQRES 2 A 88 PHE ALA ARG PHE PRO GLY ASP THR GLY SER THR GLU VAL SEQRES 3 A 88 GLN VAL ALA LEU LEU THR LEU ARG ILE ASN ARG LEU SER SEQRES 4 A 88 GLU HIS LEU LYS VAL HIS LYS LYS ASP HIS HIS SER HIS SEQRES 5 A 88 ARG GLY LEU LEU MET MET VAL GLY GLN ARG ARG ARG LEU SEQRES 6 A 88 LEU ARG TYR LEU GLN ARG GLU ASP PRO GLU ARG TYR ARG SEQRES 7 A 88 ALA LEU ILE GLU LYS LEU GLY ILE ARG GLY HELIX 1 1 LYS A 4 PHE A 14 1 11 HELIX 2 2 THR A 24 LYS A 43 1 20 HELIX 3 3 LEU A 55 ARG A 64 1 10 HELIX 4 4 LEU A 65 GLN A 70 1 6 HELIX 5 5 GLU A 75 GLY A 85 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000