PDB Short entry for 1AG2 HEADER PRION PROTEIN 31-MAR-97 1AG2 TITLE PRION PROTEIN DOMAIN PRP(121-231) FROM MOUSE, NMR, 2 MINIMIZED AVERAGE TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 121 - 231; COMPND 5 SYNONYM: PRP(121-231); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL_LINE: BL21 (DE3); SOURCE 6 GENE: T7; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: T7 PPRP-C6; SOURCE 12 EXPRESSION_SYSTEM_GENE: T7 KEYWDS PRION PROTEIN, BRAIN, GLYCOPROTEIN, GPI-ANCHOR EXPDTA SOLUTION NMR AUTHOR M.BILLETER,R.RIEK,G.WIDER,K.WUTHRICH,S.HORNEMANN,R.GLOCKSHUBER REVDAT 3 24-FEB-16 1AG2 1 JRNL VERSN REVDAT 2 24-FEB-09 1AG2 1 VERSN REVDAT 1 08-OCT-97 1AG2 0 JRNL AUTH R.RIEK,S.HORNEMANN,G.WIDER,M.BILLETER,R.GLOCKSHUBER, JRNL AUTH 2 K.WUTHRICH JRNL TITL NMR STRUCTURE OF THE MOUSE PRION PROTEIN DOMAIN JRNL TITL 2 PRP(121-231). JRNL REF NATURE V. 382 180 1996 JRNL REFN ISSN 0028-0836 JRNL PMID 8700211 JRNL DOI 10.1038/382180A0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPAL REMARK 3 AUTHORS : LUGINBUHL,GUNTERT,BILLETER,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AMX; UNITY+ REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : BEST 20 REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 128 OD2 ASP A 178 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 133 160.92 175.40 REMARK 500 GLN A 168 -33.82 -143.41 REMARK 500 SER A 170 -102.62 117.29 REMARK 500 ASN A 181 -83.16 -77.94 REMARK 500 THR A 188 -69.39 -99.32 REMARK 500 GLN A 217 -78.42 -61.87 REMARK 500 SER A 222 1.36 -64.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 208 0.11 SIDE CHAIN REMARK 500 TYR A 218 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1AG2 A 124 226 UNP P04925 PRIO_MOUSE 123 225 SEQRES 1 A 103 GLY LEU GLY GLY TYR MET LEU GLY SER ALA MET SER ARG SEQRES 2 A 103 PRO MET ILE HIS PHE GLY ASN ASP TRP GLU ASP ARG TYR SEQRES 3 A 103 TYR ARG GLU ASN MET TYR ARG TYR PRO ASN GLN VAL TYR SEQRES 4 A 103 TYR ARG PRO VAL ASP GLN TYR SER ASN GLN ASN ASN PHE SEQRES 5 A 103 VAL HIS ASP CYS VAL ASN ILE THR ILE LYS GLN HIS THR SEQRES 6 A 103 VAL THR THR THR THR LYS GLY GLU ASN PHE THR GLU THR SEQRES 7 A 103 ASP VAL LYS MET MET GLU ARG VAL VAL GLU GLN MET CYS SEQRES 8 A 103 VAL THR GLN TYR GLN LYS GLU SER GLN ALA TYR TYR HELIX 1 1 ASP A 144 ASN A 153 1 10 HELIX 2 2 GLN A 172 LYS A 194 1 23 HELIX 3 3 GLU A 200 ALA A 224 1 25 SHEET 1 S1 2 TYR A 128 GLY A 131 0 SHEET 2 S1 2 VAL A 161 ARG A 164 -1 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000