PDB Short entry for 1AK6 HEADER ACTIN-BINDING PROTEIN 29-MAY-97 1AK6 TITLE DESTRIN, NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESTRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, SUS SCROFA; SOURCE 3 ORGANISM_COMMON: HUMAN, PIG; SOURCE 4 ORGANISM_TAXID: 9606,9823; SOURCE 5 STRAIN: ,; SOURCE 6 CELLULAR_LOCATION: CYTOPLASM AND NUCLEUS; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKID-W KEYWDS ACTIN DEPOLYMERIZATION FACTOR, ACTIN-BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR H.HATANAKA,K.MORIYAMA,K.OGURA,S.ICHIKAWA,I.YAHARA,F.INAGAKI REVDAT 3 16-FEB-22 1AK6 1 REMARK REVDAT 2 24-FEB-09 1AK6 1 VERSN REVDAT 1 12-NOV-97 1AK6 0 JRNL AUTH H.HATANAKA,K.OGURA,K.MORIYAMA,S.ICHIKAWA,I.YAHARA,F.INAGAKI JRNL TITL TERTIARY STRUCTURE OF DESTRIN AND STRUCTURAL SIMILARITY JRNL TITL 2 BETWEEN TWO ACTIN-REGULATING PROTEIN FAMILIES. JRNL REF CELL(CAMBRIDGE,MASS.) V. 85 1047 1996 JRNL REFN ISSN 0092-8674 JRNL PMID 8674111 JRNL DOI 10.1016/S0092-8674(00)81305-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1AK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170917. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; HN(CO)CA; HNCA; CBCACONH; REMARK 210 CBCANH; HBHA(CO)NH; HN(CA)HA; REMARK 210 C(CO)NH; HC(C)H-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS 600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : DYNAMICAL SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST FNOE+FREPEL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA PRO A 26 HB ILE A 29 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -3 34.66 -93.51 REMARK 500 ASN A 0 -36.30 -141.76 REMARK 500 ALA A 2 43.03 -102.57 REMARK 500 SER A 3 99.59 47.48 REMARK 500 VAL A 5 -158.68 -58.08 REMARK 500 GLN A 6 17.60 -151.68 REMARK 500 VAL A 7 176.89 50.36 REMARK 500 ASP A 9 -39.47 83.80 REMARK 500 LYS A 19 -83.04 -44.84 REMARK 500 VAL A 20 -114.79 -146.98 REMARK 500 LYS A 22 89.96 -52.16 REMARK 500 CYS A 23 86.70 -159.58 REMARK 500 SER A 24 -64.22 -16.11 REMARK 500 GLU A 28 -31.97 -147.30 REMARK 500 LYS A 33 113.14 65.90 REMARK 500 LYS A 34 -52.76 -132.82 REMARK 500 CYS A 39 33.18 170.53 REMARK 500 LEU A 40 120.70 80.25 REMARK 500 SER A 41 -156.91 -52.74 REMARK 500 ASP A 43 -15.23 83.74 REMARK 500 LYS A 44 95.26 80.01 REMARK 500 LYS A 45 -112.07 -161.91 REMARK 500 CYS A 46 126.56 -27.83 REMARK 500 ILE A 48 134.81 -170.83 REMARK 500 VAL A 49 92.58 -68.16 REMARK 500 GLU A 50 84.64 -155.00 REMARK 500 GLU A 51 -29.80 -179.05 REMARK 500 LYS A 53 -138.71 -135.22 REMARK 500 GLU A 54 139.05 75.43 REMARK 500 VAL A 57 -56.28 76.67 REMARK 500 VAL A 60 93.22 -33.46 REMARK 500 VAL A 62 -91.13 -114.01 REMARK 500 ILE A 64 -165.98 -121.90 REMARK 500 THR A 65 26.50 -164.60 REMARK 500 ASP A 66 -15.49 98.57 REMARK 500 PRO A 67 -118.52 -76.47 REMARK 500 PHE A 68 -32.47 -168.70 REMARK 500 PRO A 76 -164.25 -79.83 REMARK 500 ARG A 81 168.73 161.27 REMARK 500 ASP A 86 99.78 -46.15 REMARK 500 GLU A 90 -142.33 -77.36 REMARK 500 THR A 91 -179.87 157.21 REMARK 500 SER A 94 -176.28 100.90 REMARK 500 ARG A 95 99.87 -42.42 REMARK 500 LEU A 99 174.01 -47.08 REMARK 500 LEU A 103 47.10 -86.86 REMARK 500 TRP A 104 97.46 -40.48 REMARK 500 ALA A 109 169.81 -42.42 REMARK 500 ASP A 122 -40.12 179.01 REMARK 500 PHE A 128 36.57 -97.17 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 13 0.26 SIDE CHAIN REMARK 500 ARG A 21 0.30 SIDE CHAIN REMARK 500 ARG A 32 0.10 SIDE CHAIN REMARK 500 ARG A 81 0.32 SIDE CHAIN REMARK 500 ARG A 145 0.31 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AK7 RELATED DB: PDB DBREF 1AK6 A 2 165 UNP P60982 DEST_PIG 2 165 SEQRES 1 A 174 THR MET ILE THR PRO SER SER GLY ASN SER ALA SER GLY SEQRES 2 A 174 VAL GLN VAL ALA ASP GLU VAL CYS ARG ILE PHE TYR ASP SEQRES 3 A 174 MET LYS VAL ARG LYS CYS SER THR PRO GLU GLU ILE LYS SEQRES 4 A 174 LYS ARG LYS LYS ALA VAL ILE PHE CYS LEU SER ALA ASP SEQRES 5 A 174 LYS LYS CYS ILE ILE VAL GLU GLU GLY LYS GLU ILE LEU SEQRES 6 A 174 VAL GLY ASP VAL GLY VAL THR ILE THR ASP PRO PHE LYS SEQRES 7 A 174 HIS PHE VAL GLY MET LEU PRO GLU LYS ASP CYS ARG TYR SEQRES 8 A 174 ALA LEU TYR ASP ALA SER PHE GLU THR LYS GLU SER ARG SEQRES 9 A 174 LYS GLU GLU LEU MET PHE PHE LEU TRP ALA PRO GLU LEU SEQRES 10 A 174 ALA PRO LEU LYS SER LYS MET ILE TYR ALA SER SER LYS SEQRES 11 A 174 ASP ALA ILE LYS LYS LYS PHE GLN GLY ILE LYS HIS GLU SEQRES 12 A 174 CYS GLN ALA ASN GLY PRO GLU ASP LEU ASN ARG ALA CYS SEQRES 13 A 174 ILE ALA GLU LYS LEU GLY GLY SER LEU ILE VAL ALA PHE SEQRES 14 A 174 GLU GLY CYS PRO VAL HELIX 1 H1 ASP A 9 ASP A 17 1 9 HELIX 2 H2 PRO A 26 LYS A 30 1 5 HELIX 3 H3 VAL A 57 VAL A 60 1 4 HELIX 4 H4 PHE A 68 LEU A 75 1 8 HELIX 5 H5 LEU A 111 PHE A 128 1 18 HELIX 6 H6 ARG A 145 GLY A 154 1 10 SHEET 1 S1 4 HIS A 133 ASN A 138 0 SHEET 2 S1 4 GLU A 97 PRO A 106 1 O PHE A 101 N CYS A 135 SHEET 3 S1 4 TYR A 82 GLU A 90 -1 O ALA A 83 N PHE A 102 SHEET 4 S1 4 ALA A 35 CYS A 39 -1 O VAL A 36 N LEU A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000