PDB Short entry for 1ALY HEADER CYTOKINE 05-JUN-97 1ALY TITLE CRYSTAL STRUCTURE OF HUMAN CD40 LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD40 LIGAND; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: PICHIA PASTORIS; SOURCE 6 TISSUE: BLOOD; SOURCE 7 CELL: T-LYMPHOCYTE; SOURCE 8 CELLULAR_LOCATION: MEMBRANE; SOURCE 9 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS CD40L, CD40 LIGAND, CYTOKINE, TNF, HYPER-IGM SYNDROME EXPDTA X-RAY DIFFRACTION AUTHOR M.KARPUSAS,Y.M.HSU,D.THOMAS REVDAT 3 03-APR-24 1ALY 1 REMARK REVDAT 2 24-FEB-09 1ALY 1 VERSN REVDAT 1 17-SEP-97 1ALY 0 JRNL AUTH M.KARPUSAS,Y.M.HSU,J.H.WANG,J.THOMPSON,S.LEDERMAN,L.CHESS, JRNL AUTH 2 D.THOMAS JRNL TITL 2 A CRYSTAL STRUCTURE OF AN EXTRACELLULAR FRAGMENT OF HUMAN JRNL TITL 2 CD40 LIGAND. JRNL REF STRUCTURE V. 3 1031 1995 JRNL REFN ISSN 0969-2126 JRNL PMID 8589998 JRNL DOI 10.1016/S0969-2126(01)00239-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KARPUSAS,Y.M.HSU,J.H.WANG,J.THOMPSON,S.LEDERMAN,L.CHESS, REMARK 1 AUTH 2 D.THOMAS REMARK 1 TITL ERRATUM. 2 A CRYSTAL STRUCTURE OF AN EXTRACELLULAR FRAGMENT REMARK 1 TITL 2 OF HUMAN CD40 LIGAND REMARK 1 REF STRUCTURE V. 3 1426 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.3 REMARK 3 NUMBER OF REFLECTIONS : 10990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1099 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1113 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ALY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000170981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-94 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BUDDHA, XDS REMARK 200 DATA SCALING SOFTWARE : XDS, BUDDHA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.1 REMARK 200 DATA REDUNDANCY : 2.710 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.05600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.05600 REMARK 200 R SYM FOR SHELL (I) : 0.15000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 1CDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 1.4 M NA REMARK 280 CITRATE, 50 MM HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.58500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.27706 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.15333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 38.58500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.27706 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.15333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 38.58500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.27706 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.15333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.55412 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.30667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.55412 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.30667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.55412 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.30667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ACTIVE MOLECULE IS A TRIMER GENERATED BY APPLYING THE REMARK 300 THREE-FOLD SYMMETRY AROUND THE C AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 125 CG HIS A 125 CD2 0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 126 CA - CB - CG1 ANGL. DEV. = 10.8 DEGREES REMARK 500 TYR A 145 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 145 CG - CD1 - CE1 ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR A 146 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 165 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 181 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 ARG A 181 CB - CG - CD ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 203 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 207 CD - NE - CZ ANGL. DEV. = -9.4 DEGREES REMARK 500 SER A 236 C - N - CA ANGL. DEV. = 18.8 DEGREES REMARK 500 PHE A 256 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 LEU A 261 C - N - CA ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 118 61.77 -52.13 REMARK 500 ASN A 119 -63.10 -150.60 REMARK 500 PRO A 120 22.44 -48.58 REMARK 500 GLN A 121 155.32 -49.86 REMARK 500 THR A 135 -66.27 -90.95 REMARK 500 ALA A 187 -33.15 -132.94 REMARK 500 GLU A 202 136.79 96.10 REMARK 500 SER A 213 73.02 70.37 REMARK 500 SER A 214 99.73 -27.95 REMARK 500 LYS A 216 157.84 -45.19 REMARK 500 CYS A 218 77.44 -5.48 REMARK 500 ALA A 235 -111.34 98.13 REMARK 500 HIS A 249 47.55 -87.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 120 GLN A 121 135.29 REMARK 500 THR A 134 THR A 135 -122.70 REMARK 500 THR A 135 SER A 136 -60.92 REMARK 500 GLY A 234 ALA A 235 129.59 REMARK 500 ALA A 235 SER A 236 -64.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 145 0.18 SIDE CHAIN REMARK 500 TYR A 146 0.09 SIDE CHAIN REMARK 500 ARG A 165 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1ALY A 116 261 UNP P29965 TNFL5_HUMAN 116 261 SEQRES 1 A 146 GLY ASP GLN ASN PRO GLN ILE ALA ALA HIS VAL ILE SER SEQRES 2 A 146 GLU ALA SER SER LYS THR THR SER VAL LEU GLN TRP ALA SEQRES 3 A 146 GLU LYS GLY TYR TYR THR MET SER ASN ASN LEU VAL THR SEQRES 4 A 146 LEU GLU ASN GLY LYS GLN LEU THR VAL LYS ARG GLN GLY SEQRES 5 A 146 LEU TYR TYR ILE TYR ALA GLN VAL THR PHE CYS SER ASN SEQRES 6 A 146 ARG GLU ALA SER SER GLN ALA PRO PHE ILE ALA SER LEU SEQRES 7 A 146 CYS LEU LYS SER PRO GLY ARG PHE GLU ARG ILE LEU LEU SEQRES 8 A 146 ARG ALA ALA ASN THR HIS SER SER ALA LYS PRO CYS GLY SEQRES 9 A 146 GLN GLN SER ILE HIS LEU GLY GLY VAL PHE GLU LEU GLN SEQRES 10 A 146 PRO GLY ALA SER VAL PHE VAL ASN VAL THR ASP PRO SER SEQRES 11 A 146 GLN VAL SER HIS GLY THR GLY PHE THR SER PHE GLY LEU SEQRES 12 A 146 LEU LYS LEU FORMUL 2 HOH *64(H2 O) HELIX 1 1 PRO A 244 GLN A 246 5 3 SHEET 1 A 4 ALA A 123 ILE A 127 0 SHEET 2 A 4 SER A 255 LYS A 260 -1 N LEU A 258 O ALA A 124 SHEET 3 A 4 GLY A 167 SER A 179 -1 N GLN A 174 O SER A 255 SHEET 4 A 4 GLY A 219 LEU A 231 -1 N LEU A 231 O GLY A 167 SHEET 1 B 2 VAL A 153 GLU A 156 0 SHEET 2 B 2 GLN A 160 VAL A 163 -1 N THR A 162 O THR A 154 SHEET 1 C 3 SER A 236 VAL A 241 0 SHEET 2 C 3 PRO A 188 LYS A 196 -1 N LYS A 196 O SER A 236 SHEET 3 C 3 ARG A 203 THR A 211 -1 N ASN A 210 O PHE A 189 SSBOND 1 CYS A 178 CYS A 218 1555 1555 2.05 CISPEP 1 GLY A 116 ASP A 117 0 -21.99 CISPEP 2 ASN A 157 GLY A 158 0 -0.36 CISPEP 3 GLY A 158 LYS A 159 0 -3.72 CISPEP 4 GLN A 186 ALA A 187 0 19.91 CISPEP 5 SER A 214 ALA A 215 0 28.22 CISPEP 6 GLY A 250 THR A 251 0 5.39 CRYST1 77.170 77.170 90.460 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012958 0.007482 0.000000 0.00000 SCALE2 0.000000 0.014963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011055 0.00000