PDB Short entry for 1ANW HEADER CALCIUM/PHOSPHOLIPID-BINDING PROTEIN 26-OCT-93 1ANW TITLE THE EFFECT OF METAL BINDING ON THE STRUCTURE OF ANNEXIN V AND TITLE 2 IMPLICATIONS FOR MEMBRANE BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANNEXIN V; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM/PHOSPHOLIPID-BINDING PROTEIN, CALCIUM-PHOSPHOLIPID-BINDING KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.LEWIT-BENTLEY,S.MORERA,R.HUBER,G.BODO REVDAT 3 07-FEB-24 1ANW 1 REMARK LINK REVDAT 2 24-FEB-09 1ANW 1 VERSN REVDAT 1 20-DEC-94 1ANW 0 JRNL AUTH A.LEWIT-BENTLEY,S.MORERA,R.HUBER,G.BODO JRNL TITL THE EFFECT OF METAL BINDING ON THE STRUCTURE OF ANNEXIN V JRNL TITL 2 AND IMPLICATIONS FOR MEMBRANE BINDING. JRNL REF EUR.J.BIOCHEM. V. 210 73 1992 JRNL REFN ISSN 0014-2956 JRNL PMID 1446685 JRNL DOI 10.1111/J.1432-1033.1992.TB17392.X REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5036 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.043 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.058 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.004 ; 0.010 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.188 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.217 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.246 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.227 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 1.800 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 24.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.902 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.613 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.685 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.804 ; 2.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ANW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.45000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 220 O HOH A 946 1.99 REMARK 500 NH2 ARG B 6 O HOH B 761 2.13 REMARK 500 CD ARG B 89 O HOH B 986 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 4 C LEU A 5 N -0.157 REMARK 500 GLN A 158 C ALA A 159 N 0.191 REMARK 500 ARG A 161 C ASP A 162 N 0.159 REMARK 500 SER A 230 C GLY A 231 N 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 5 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 THR A 10 CB - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 ASP A 11 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 11 CB - CG - OD2 ANGL. DEV. = 8.7 DEGREES REMARK 500 GLU A 36 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 THR A 43 CA - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 45 NH1 - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLU A 112 CG - CD - OE1 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLU A 121 OE1 - CD - OE2 ANGL. DEV. = -9.5 DEGREES REMARK 500 TYR A 133 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU A 138 CG - CD - OE1 ANGL. DEV. = 12.8 DEGREES REMARK 500 GLU A 138 CG - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 151 CG - CD - NE ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU A 157 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 211 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 211 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 SER A 230 O - C - N ANGL. DEV. = -17.8 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 266 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 271 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 271 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 271 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 276 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 280 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 307 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 LYS A 310 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 GLY A 317 C - N - CA ANGL. DEV. = 30.8 DEGREES REMARK 500 ASP B 16 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 20 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU B 39 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 63 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 64 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG B 89 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 123 CD - NE - CZ ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR B 133 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR B 148 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 151 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ASN B 160 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP B 175 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 68 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 105 133.56 -35.99 REMARK 500 ASN A 160 42.78 -141.59 REMARK 500 ASP A 162 153.78 -43.24 REMARK 500 SER A 217 -27.58 -154.52 REMARK 500 ASP A 226 94.84 66.98 REMARK 500 GLU A 228 -39.99 -155.80 REMARK 500 SER A 230 169.90 -12.00 REMARK 500 SER A 246 111.99 177.61 REMARK 500 ILE A 279 -72.14 -124.09 REMARK 500 GLU A 318 150.50 172.54 REMARK 500 GLN B 3 67.99 -109.49 REMARK 500 ALA B 165 -156.45 -154.58 REMARK 500 ASP B 226 -97.62 77.89 REMARK 500 ARG B 227 103.97 93.05 REMARK 500 GLU B 228 -38.27 135.91 REMARK 500 THR B 229 -134.16 -118.08 REMARK 500 SER B 230 145.30 49.70 REMARK 500 SER B 246 119.34 -162.47 REMARK 500 ASP B 265 78.82 -100.87 REMARK 500 ILE B 279 -65.36 -132.16 REMARK 500 ASP B 280 27.39 -146.95 REMARK 500 GLU B 318 140.05 177.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 50 0.11 SIDE CHAIN REMARK 500 ARG A 201 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 161 19.89 REMARK 500 ARG A 227 -12.08 REMARK 500 SER A 230 -22.97 REMARK 500 ASP A 319 12.81 REMARK 500 VAL B 4 16.04 REMARK 500 ASP B 34 12.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 351 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 28 O REMARK 620 2 GLY A 30 O 82.4 REMARK 620 3 GLY A 32 O 96.6 81.1 REMARK 620 4 GLU A 72 OE1 97.2 158.9 78.0 REMARK 620 5 GLU A 72 OE2 93.7 149.8 129.1 51.2 REMARK 620 6 HOH A 823 O 179.3 97.0 83.6 83.5 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 352 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 259 O REMARK 620 2 GLY A 261 O 94.2 REMARK 620 3 GLY A 263 O 103.3 114.8 REMARK 620 4 ASP A 303 OD1 87.6 121.3 121.7 REMARK 620 5 ASP A 303 OD2 85.3 166.3 78.5 45.0 REMARK 620 6 HOH A 902 O 169.1 91.5 82.6 81.5 86.9 REMARK 620 7 HOH A 981 O 113.4 75.9 141.1 50.6 91.7 59.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 353 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 28 O REMARK 620 2 GLY B 30 O 81.3 REMARK 620 3 GLY B 32 O 88.5 75.9 REMARK 620 4 GLU B 72 OE1 77.1 146.4 78.2 REMARK 620 5 GLU B 72 OE2 109.4 164.3 114.9 49.2 REMARK 620 6 HOH B 757 O 80.9 66.7 142.2 133.0 102.9 REMARK 620 7 HOH B 861 O 168.5 97.4 80.1 98.8 74.4 109.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 354 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 259 O REMARK 620 2 GLY B 261 O 86.9 REMARK 620 3 GLY B 263 O 87.7 89.0 REMARK 620 4 ASP B 303 OD1 88.2 144.8 125.6 REMARK 620 5 ASP B 303 OD2 77.5 159.5 77.2 49.0 REMARK 620 6 HOH B 891 O 82.4 68.5 155.7 76.4 121.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 354 DBREF 1ANW A 2 320 UNP P08758 ANXA5_HUMAN 1 319 DBREF 1ANW B 2 320 UNP P08758 ANXA5_HUMAN 1 319 SEQRES 1 A 319 ALA GLN VAL LEU ARG GLY THR VAL THR ASP PHE PRO GLY SEQRES 2 A 319 PHE ASP GLU ARG ALA ASP ALA GLU THR LEU ARG LYS ALA SEQRES 3 A 319 MET LYS GLY LEU GLY THR ASP GLU GLU SER ILE LEU THR SEQRES 4 A 319 LEU LEU THR SER ARG SER ASN ALA GLN ARG GLN GLU ILE SEQRES 5 A 319 SER ALA ALA PHE LYS THR LEU PHE GLY ARG ASP LEU LEU SEQRES 6 A 319 ASP ASP LEU LYS SER GLU LEU THR GLY LYS PHE GLU LYS SEQRES 7 A 319 LEU ILE VAL ALA LEU MET LYS PRO SER ARG LEU TYR ASP SEQRES 8 A 319 ALA TYR GLU LEU LYS HIS ALA LEU LYS GLY ALA GLY THR SEQRES 9 A 319 ASN GLU LYS VAL LEU THR GLU ILE ILE ALA SER ARG THR SEQRES 10 A 319 PRO GLU GLU LEU ARG ALA ILE LYS GLN VAL TYR GLU GLU SEQRES 11 A 319 GLU TYR GLY SER SER LEU GLU ASP ASP VAL VAL GLY ASP SEQRES 12 A 319 THR SER GLY TYR TYR GLN ARG MET LEU VAL VAL LEU LEU SEQRES 13 A 319 GLN ALA ASN ARG ASP PRO ASP ALA GLY ILE ASP GLU ALA SEQRES 14 A 319 GLN VAL GLU GLN ASP ALA GLN ALA LEU PHE GLN ALA GLY SEQRES 15 A 319 GLU LEU LYS TRP GLY THR ASP GLU GLU LYS PHE ILE THR SEQRES 16 A 319 ILE PHE GLY THR ARG SER VAL SER HIS LEU ARG LYS VAL SEQRES 17 A 319 PHE ASP LYS TYR MET THR ILE SER GLY PHE GLN ILE GLU SEQRES 18 A 319 GLU THR ILE ASP ARG GLU THR SER GLY ASN LEU GLU GLN SEQRES 19 A 319 LEU LEU LEU ALA VAL VAL LYS SER ILE ARG SER ILE PRO SEQRES 20 A 319 ALA TYR LEU ALA GLU THR LEU TYR TYR ALA MET LYS GLY SEQRES 21 A 319 ALA GLY THR ASP ASP HIS THR LEU ILE ARG VAL MET VAL SEQRES 22 A 319 SER ARG SER GLU ILE ASP LEU PHE ASN ILE ARG LYS GLU SEQRES 23 A 319 PHE ARG LYS ASN PHE ALA THR SER LEU TYR SER MET ILE SEQRES 24 A 319 LYS GLY ASP THR SER GLY ASP TYR LYS LYS ALA LEU LEU SEQRES 25 A 319 LEU LEU CYS GLY GLU ASP ASP SEQRES 1 B 319 ALA GLN VAL LEU ARG GLY THR VAL THR ASP PHE PRO GLY SEQRES 2 B 319 PHE ASP GLU ARG ALA ASP ALA GLU THR LEU ARG LYS ALA SEQRES 3 B 319 MET LYS GLY LEU GLY THR ASP GLU GLU SER ILE LEU THR SEQRES 4 B 319 LEU LEU THR SER ARG SER ASN ALA GLN ARG GLN GLU ILE SEQRES 5 B 319 SER ALA ALA PHE LYS THR LEU PHE GLY ARG ASP LEU LEU SEQRES 6 B 319 ASP ASP LEU LYS SER GLU LEU THR GLY LYS PHE GLU LYS SEQRES 7 B 319 LEU ILE VAL ALA LEU MET LYS PRO SER ARG LEU TYR ASP SEQRES 8 B 319 ALA TYR GLU LEU LYS HIS ALA LEU LYS GLY ALA GLY THR SEQRES 9 B 319 ASN GLU LYS VAL LEU THR GLU ILE ILE ALA SER ARG THR SEQRES 10 B 319 PRO GLU GLU LEU ARG ALA ILE LYS GLN VAL TYR GLU GLU SEQRES 11 B 319 GLU TYR GLY SER SER LEU GLU ASP ASP VAL VAL GLY ASP SEQRES 12 B 319 THR SER GLY TYR TYR GLN ARG MET LEU VAL VAL LEU LEU SEQRES 13 B 319 GLN ALA ASN ARG ASP PRO ASP ALA GLY ILE ASP GLU ALA SEQRES 14 B 319 GLN VAL GLU GLN ASP ALA GLN ALA LEU PHE GLN ALA GLY SEQRES 15 B 319 GLU LEU LYS TRP GLY THR ASP GLU GLU LYS PHE ILE THR SEQRES 16 B 319 ILE PHE GLY THR ARG SER VAL SER HIS LEU ARG LYS VAL SEQRES 17 B 319 PHE ASP LYS TYR MET THR ILE SER GLY PHE GLN ILE GLU SEQRES 18 B 319 GLU THR ILE ASP ARG GLU THR SER GLY ASN LEU GLU GLN SEQRES 19 B 319 LEU LEU LEU ALA VAL VAL LYS SER ILE ARG SER ILE PRO SEQRES 20 B 319 ALA TYR LEU ALA GLU THR LEU TYR TYR ALA MET LYS GLY SEQRES 21 B 319 ALA GLY THR ASP ASP HIS THR LEU ILE ARG VAL MET VAL SEQRES 22 B 319 SER ARG SER GLU ILE ASP LEU PHE ASN ILE ARG LYS GLU SEQRES 23 B 319 PHE ARG LYS ASN PHE ALA THR SER LEU TYR SER MET ILE SEQRES 24 B 319 LYS GLY ASP THR SER GLY ASP TYR LYS LYS ALA LEU LEU SEQRES 25 B 319 LEU LEU CYS GLY GLU ASP ASP HET CA A 351 1 HET CA A 352 1 HET CA B 353 1 HET CA B 354 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *265(H2 O) HELIX 1 1 ASP A 16 LYS A 29 1 14 HELIX 2 2 ASP A 34 THR A 43 1 10 HELIX 3 3 SER A 46 GLY A 62 1 17 HELIX 4 4 ASP A 64 LEU A 73 1 10 HELIX 5 5 THR A 74 LYS A 86 1 13 HELIX 6 6 PRO A 87 LEU A 100 1 14 HELIX 7 7 LYS A 101 THR A 105 5 5 HELIX 8 8 ASN A 106 ARG A 117 1 12 HELIX 9 9 THR A 118 GLY A 134 1 17 HELIX 10 10 SER A 136 THR A 145 1 10 HELIX 11 11 SER A 146 GLN A 158 1 13 HELIX 12 12 ASP A 168 LEU A 185 1 18 HELIX 13 13 ASP A 190 ARG A 201 1 12 HELIX 14 14 SER A 202 ILE A 216 1 15 HELIX 15 15 GLN A 220 ILE A 225 5 6 HELIX 16 16 GLY A 231 SER A 246 1 16 HELIX 17 17 SER A 246 ALA A 258 1 13 HELIX 18 18 ASP A 265 ARG A 276 1 12 HELIX 19 19 ASP A 280 ALA A 293 1 14 HELIX 20 20 SER A 295 THR A 304 1 10 HELIX 21 21 SER A 305 GLY A 317 1 13 HELIX 22 22 ASP B 16 LYS B 29 1 14 HELIX 23 23 ASP B 34 SER B 44 1 11 HELIX 24 24 SER B 46 GLY B 62 1 17 HELIX 25 25 ASP B 64 LEU B 73 1 10 HELIX 26 26 THR B 74 LYS B 86 1 13 HELIX 27 27 PRO B 87 HIS B 98 1 12 HELIX 28 28 LYS B 101 THR B 105 5 5 HELIX 29 29 ASN B 106 ARG B 117 1 12 HELIX 30 30 THR B 118 GLY B 134 1 17 HELIX 31 31 SER B 136 THR B 145 1 10 HELIX 32 32 SER B 146 GLN B 158 1 13 HELIX 33 33 ASP B 168 LEU B 185 1 18 HELIX 34 34 ASP B 190 ARG B 201 1 12 HELIX 35 35 SER B 202 GLY B 218 1 17 HELIX 36 36 GLN B 220 ILE B 225 5 6 HELIX 37 37 GLY B 231 SER B 246 1 16 HELIX 38 38 SER B 246 ALA B 258 1 13 HELIX 39 39 ASP B 265 SER B 277 1 13 HELIX 40 40 ASP B 280 ALA B 293 1 14 HELIX 41 41 SER B 295 THR B 304 1 10 HELIX 42 42 SER B 305 GLY B 317 1 13 LINK O MET A 28 CA CA A 351 1555 1555 2.35 LINK O GLY A 30 CA CA A 351 1555 1555 2.33 LINK O GLY A 32 CA CA A 351 1555 1555 2.40 LINK OE1 GLU A 72 CA CA A 351 1555 1555 2.70 LINK OE2 GLU A 72 CA CA A 351 1555 1555 2.34 LINK O MET A 259 CA CA A 352 1555 1555 2.20 LINK O GLY A 261 CA CA A 352 1555 1555 2.16 LINK O GLY A 263 CA CA A 352 1555 1555 2.12 LINK OD1 ASP A 303 CA CA A 352 1555 1555 2.96 LINK OD2 ASP A 303 CA CA A 352 1555 1555 2.76 LINK CA CA A 351 O HOH A 823 1555 1555 2.32 LINK CA CA A 352 O HOH A 902 1555 1555 3.04 LINK CA CA A 352 O HOH A 981 1555 1555 1.83 LINK O MET B 28 CA CA B 353 1555 1555 2.36 LINK O GLY B 30 CA CA B 353 1555 1555 2.46 LINK O GLY B 32 CA CA B 353 1555 1555 2.37 LINK OE1 GLU B 72 CA CA B 353 1555 1555 2.51 LINK OE2 GLU B 72 CA CA B 353 1555 1555 2.54 LINK O MET B 259 CA CA B 354 1555 1555 2.43 LINK O GLY B 261 CA CA B 354 1555 1555 2.37 LINK O GLY B 263 CA CA B 354 1555 1555 2.55 LINK OD1 ASP B 303 CA CA B 354 1555 1555 2.69 LINK OD2 ASP B 303 CA CA B 354 1555 1555 2.49 LINK CA CA B 353 O HOH B 757 1555 1555 2.27 LINK CA CA B 353 O HOH B 861 1555 1555 2.24 LINK CA CA B 354 O HOH B 891 1555 1555 2.68 SITE 1 AC1 5 MET A 28 GLY A 30 GLY A 32 GLU A 72 SITE 2 AC1 5 HOH A 823 SITE 1 AC2 6 MET A 259 GLY A 261 GLY A 263 ASP A 303 SITE 2 AC2 6 HOH A 902 HOH A 981 SITE 1 AC3 6 MET B 28 GLY B 30 GLY B 32 GLU B 72 SITE 2 AC3 6 HOH B 757 HOH B 861 SITE 1 AC4 5 MET B 259 GLY B 261 GLY B 263 ASP B 303 SITE 2 AC4 5 HOH B 891 CRYST1 83.900 80.900 71.400 90.00 108.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011919 0.000000 0.004034 0.00000 SCALE2 0.000000 0.012361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014786 0.00000