PDB Short entry for 1APJ HEADER EXTRACELLULAR MATRIX 22-JUL-97 1APJ TITLE NMR STUDY OF THE TRANSFORMING GROWTH FACTOR BETA BINDING PROTEIN-LIKE TITLE 2 DOMAIN (TB MODULE/8-CYS DOMAIN), NMR, 21 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRILLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANSFORMING GROWTH FACTOR BETA BINDING PROTEIN-LIKE DOMAIN COMPND 5 6(TB6), RESIDUES 2054 - 2125; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 FRAGMENT: TRANSFORMING GROWTH FACTOR BETA BINDING PROTEIN-LIKE SOURCE 3 DOMAIN 6(TB6), RESIDUES 2054-2125; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS FIBRILLIN FRAGMENT, MICROFIBRIL, TB MODULE, MARFAN SYNDROME, KEYWDS 2 CONNECTIVE TISSUE, NOVEL FOLD, EXTRACELLULAR MATRIX EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR X.YUAN,A.K.DOWNING,V.KNOTT,P.A.HANDFORD REVDAT 3 03-NOV-21 1APJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1APJ 1 VERSN REVDAT 1 28-JAN-98 1APJ 0 JRNL AUTH X.YUAN,A.K.DOWNING,V.KNOTT,P.A.HANDFORD JRNL TITL SOLUTION STRUCTURE OF THE TRANSFORMING GROWTH FACTOR JRNL TITL 2 BETA-BINDING PROTEIN-LIKE MODULE, A DOMAIN ASSOCIATED WITH JRNL TITL 3 MATRIX FIBRILS. JRNL REF EMBO J. V. 16 6659 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9362480 JRNL DOI 10.1093/EMBOJ/16.22.6659 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1APJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171098. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A2056 47.26 27.72 REMARK 500 1 SER A2059 -163.17 -113.14 REMARK 500 1 GLU A2066 57.24 -91.20 REMARK 500 1 SER A2072 56.65 70.95 REMARK 500 1 CYS A2085 -62.71 -106.64 REMARK 500 1 LYS A2088 73.66 28.10 REMARK 500 1 CYS A2096 125.51 -28.10 REMARK 500 1 SER A2115 88.44 -54.92 REMARK 500 1 ILE A2117 -85.92 51.05 REMARK 500 1 VAL A2119 116.29 -36.66 REMARK 500 1 ASP A2122 27.58 43.92 REMARK 500 1 SER A2124 165.56 158.49 REMARK 500 2 ALA A 2 -178.36 53.12 REMARK 500 2 LEU A2056 41.90 38.18 REMARK 500 2 SER A2059 -159.24 -116.44 REMARK 500 2 SER A2079 153.55 -41.64 REMARK 500 2 LYS A2088 77.60 30.45 REMARK 500 2 CYS A2096 123.81 -27.22 REMARK 500 2 PRO A2103 31.78 -92.62 REMARK 500 2 SER A2115 67.23 -100.60 REMARK 500 2 ILE A2117 -77.87 -26.12 REMARK 500 2 ILE A2118 66.32 167.12 REMARK 500 2 ASP A2122 -47.43 87.29 REMARK 500 2 SER A2124 97.11 59.48 REMARK 500 3 ALA A 2 -161.08 173.68 REMARK 500 3 GLN A2054 -174.82 -49.03 REMARK 500 3 ASP A2055 45.79 -89.00 REMARK 500 3 LEU A2056 22.94 45.65 REMARK 500 3 SER A2059 -161.25 -120.47 REMARK 500 3 LYS A2088 70.12 31.00 REMARK 500 3 CYS A2096 111.28 -27.45 REMARK 500 3 LEU A2098 95.29 -35.39 REMARK 500 3 PRO A2103 31.39 -94.04 REMARK 500 3 ILE A2117 -86.27 49.16 REMARK 500 3 VAL A2119 -37.53 -29.33 REMARK 500 3 SER A2124 -56.94 -166.36 REMARK 500 4 ALA A 2 139.11 65.92 REMARK 500 4 ASP A2055 93.75 57.37 REMARK 500 4 SER A2059 -165.36 -107.59 REMARK 500 4 SER A2075 -35.99 -37.62 REMARK 500 4 ARG A2076 -169.43 -109.15 REMARK 500 4 LYS A2088 77.14 30.08 REMARK 500 4 CYS A2096 122.12 -26.92 REMARK 500 4 LEU A2098 110.36 -37.67 REMARK 500 4 PRO A2103 30.44 -94.63 REMARK 500 4 SER A2115 88.25 -47.37 REMARK 500 4 ILE A2117 -86.65 61.53 REMARK 500 4 VAL A2119 -44.76 -29.53 REMARK 500 4 PRO A2121 86.00 -44.86 REMARK 500 4 ASP A2122 38.74 38.22 REMARK 500 REMARK 500 THIS ENTRY HAS 266 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A2057 0.29 SIDE CHAIN REMARK 500 1 ARG A2076 0.25 SIDE CHAIN REMARK 500 2 ARG A2057 0.20 SIDE CHAIN REMARK 500 2 ARG A2076 0.19 SIDE CHAIN REMARK 500 2 ARG A2108 0.31 SIDE CHAIN REMARK 500 3 ARG A2057 0.10 SIDE CHAIN REMARK 500 3 ARG A2076 0.31 SIDE CHAIN REMARK 500 4 ARG A2057 0.12 SIDE CHAIN REMARK 500 4 ARG A2076 0.16 SIDE CHAIN REMARK 500 5 ARG A2057 0.26 SIDE CHAIN REMARK 500 5 ARG A2076 0.21 SIDE CHAIN REMARK 500 5 ARG A2108 0.17 SIDE CHAIN REMARK 500 6 ARG A2057 0.21 SIDE CHAIN REMARK 500 6 ARG A2076 0.30 SIDE CHAIN REMARK 500 6 ARG A2108 0.14 SIDE CHAIN REMARK 500 7 ARG A2057 0.11 SIDE CHAIN REMARK 500 7 ARG A2076 0.25 SIDE CHAIN REMARK 500 7 ARG A2108 0.30 SIDE CHAIN REMARK 500 8 ARG A2057 0.28 SIDE CHAIN REMARK 500 8 ARG A2076 0.29 SIDE CHAIN REMARK 500 8 ARG A2108 0.30 SIDE CHAIN REMARK 500 9 ARG A2057 0.23 SIDE CHAIN REMARK 500 9 ARG A2076 0.25 SIDE CHAIN REMARK 500 9 ARG A2108 0.30 SIDE CHAIN REMARK 500 10 ARG A2057 0.16 SIDE CHAIN REMARK 500 10 ARG A2108 0.28 SIDE CHAIN REMARK 500 11 ARG A2057 0.08 SIDE CHAIN REMARK 500 11 ARG A2076 0.23 SIDE CHAIN REMARK 500 11 ARG A2108 0.08 SIDE CHAIN REMARK 500 12 ARG A2057 0.21 SIDE CHAIN REMARK 500 12 ARG A2076 0.20 SIDE CHAIN REMARK 500 12 ARG A2108 0.30 SIDE CHAIN REMARK 500 13 ARG A2057 0.25 SIDE CHAIN REMARK 500 13 ARG A2076 0.26 SIDE CHAIN REMARK 500 13 ARG A2108 0.26 SIDE CHAIN REMARK 500 14 ARG A2057 0.31 SIDE CHAIN REMARK 500 14 ARG A2076 0.30 SIDE CHAIN REMARK 500 14 ARG A2108 0.23 SIDE CHAIN REMARK 500 15 ARG A2057 0.27 SIDE CHAIN REMARK 500 15 ARG A2076 0.21 SIDE CHAIN REMARK 500 16 ARG A2057 0.24 SIDE CHAIN REMARK 500 16 ARG A2076 0.29 SIDE CHAIN REMARK 500 17 ARG A2057 0.14 SIDE CHAIN REMARK 500 17 ARG A2076 0.29 SIDE CHAIN REMARK 500 17 ARG A2108 0.31 SIDE CHAIN REMARK 500 18 ARG A2057 0.28 SIDE CHAIN REMARK 500 18 ARG A2076 0.23 SIDE CHAIN REMARK 500 18 ARG A2108 0.27 SIDE CHAIN REMARK 500 19 ARG A2057 0.29 SIDE CHAIN REMARK 500 19 ARG A2076 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 54 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1APJ A 1 2125 UNP P35555 FBN1_HUMAN 2049 2125 SEQADV 1APJ SER A 1 UNP P35555 ARG 2052 ENGINEERED MUTATION SEQADV 1APJ ALA A 2 UNP P35555 CYS 2053 ENGINEERED MUTATION SEQRES 1 A 74 SER ALA GLN ASP LEU ARG MET SER TYR CYS TYR ALA LYS SEQRES 2 A 74 PHE GLU GLY GLY LYS CYS SER SER PRO LYS SER ARG ASN SEQRES 3 A 74 HIS SER LYS GLN GLU CYS CYS CYS ALA LEU LYS GLY GLU SEQRES 4 A 74 GLY TRP GLY ASP PRO CYS GLU LEU CYS PRO THR GLU PRO SEQRES 5 A 74 ASP GLU ALA PHE ARG GLN ILE CYS PRO TYR GLY SER GLY SEQRES 6 A 74 ILE ILE VAL GLY PRO ASP ASP SER ALA HELIX 1 H1 LYS A 2080 CYS A 2084 1 5 HELIX 2 H2 GLU A 2105 ILE A 2110 1 6 SHEET 1 S1 2 MET A2058 SER A2059 0 SHEET 2 S1 2 HIS A2078 SER A2079 -1 O HIS A2078 N SER A2059 SHEET 1 S2 4 GLU A2097 LEU A2098 0 SHEET 2 S2 4 GLY A2091 TRP A2092 -1 N TRP A2092 O GLU A2097 SHEET 3 S2 4 CYS A2061 PHE A2065 -1 N TYR A2062 O GLY A2091 SHEET 4 S2 4 CYS A2070 PRO A2073 -1 O SER A2072 N ALA A2063 SSBOND 1 CYS A 2061 CYS A 2083 1555 1555 2.02 SSBOND 2 CYS A 2070 CYS A 2096 1555 1555 2.02 SSBOND 3 CYS A 2084 CYS A 2099 1555 1555 2.03 SSBOND 4 CYS A 2085 CYS A 2111 1555 1555 2.02 CISPEP 1 GLU A 2102 PRO A 2103 1 0.10 CISPEP 2 GLU A 2102 PRO A 2103 2 0.06 CISPEP 3 GLU A 2102 PRO A 2103 3 0.25 CISPEP 4 GLU A 2102 PRO A 2103 4 0.13 CISPEP 5 GLU A 2102 PRO A 2103 5 0.14 CISPEP 6 GLU A 2102 PRO A 2103 6 -0.06 CISPEP 7 GLU A 2102 PRO A 2103 7 0.06 CISPEP 8 GLU A 2102 PRO A 2103 8 0.02 CISPEP 9 GLU A 2102 PRO A 2103 9 0.14 CISPEP 10 GLU A 2102 PRO A 2103 10 0.13 CISPEP 11 GLU A 2102 PRO A 2103 11 0.19 CISPEP 12 GLU A 2102 PRO A 2103 12 0.21 CISPEP 13 GLU A 2102 PRO A 2103 13 -0.01 CISPEP 14 GLU A 2102 PRO A 2103 14 -0.04 CISPEP 15 GLU A 2102 PRO A 2103 15 0.25 CISPEP 16 GLU A 2102 PRO A 2103 16 0.05 CISPEP 17 GLU A 2102 PRO A 2103 17 0.02 CISPEP 18 GLU A 2102 PRO A 2103 18 -0.14 CISPEP 19 GLU A 2102 PRO A 2103 19 0.12 CISPEP 20 GLU A 2102 PRO A 2103 20 0.14 CISPEP 21 GLU A 2102 PRO A 2103 21 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000