PDB Short entry for 1ARE HEADER TRANSCRIPTION REGULATION 01-OCT-93 1ARE TITLE STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR TITLE 2 DNA BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: YEAST TRANSCRIPTION FACTOR ADR1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS TRANSCRIPTION REGULATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.C.HOFFMAN,R.X.XU,S.J.HORVATH,J.R.HERRIOTT,R.E.KLEVIT REVDAT 4 10-APR-24 1ARE 1 REMARK SEQADV LINK REVDAT 3 29-NOV-17 1ARE 1 REMARK HELIX REVDAT 2 24-FEB-09 1ARE 1 VERSN REVDAT 1 31-JAN-94 1ARE 0 JRNL AUTH R.C.HOFFMAN,S.J.HORVATH,R.E.KLEVIT JRNL TITL STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: JRNL TITL 2 IMPLICATIONS FOR DNA BINDING. JRNL REF PROTEIN SCI. V. 2 951 1993 JRNL REFN ISSN 0961-8368 JRNL PMID 8318900 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.HOFFMAN,R.X.XU,R.E.KLEVIT,J.R.HERRIOTT REMARK 1 TITL A SIMPLE METHOD FOR THE REFINEMENT OF MODELS DERIVED FROM REMARK 1 TITL 2 NMR DATA DEMONSTRATED ON A ZINC-FINGER DOMAIN FROM YEAST REMARK 1 TITL 3 ADR1 REMARK 1 REF J.MAGN.RESON. V. 102 61 1993 REMARK 1 REFN ISSN 0022-2364 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ARE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171164. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 122 H SER A 125 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 110 -9.66 135.55 REMARK 500 1 THR A 127 -80.17 -131.67 REMARK 500 1 GLU A 129 83.00 -173.09 REMARK 500 2 THR A 110 12.79 119.54 REMARK 500 2 THR A 127 -36.06 -34.08 REMARK 500 2 ASN A 128 103.40 -177.52 REMARK 500 2 GLU A 129 80.79 -62.62 REMARK 500 3 THR A 110 20.83 128.86 REMARK 500 3 ASN A 128 -48.59 -134.08 REMARK 500 3 GLU A 129 -36.44 -39.17 REMARK 500 4 THR A 110 16.20 131.33 REMARK 500 4 THR A 127 -100.25 -127.48 REMARK 500 4 ASN A 128 96.07 177.44 REMARK 500 4 GLU A 129 82.91 -164.51 REMARK 500 5 THR A 110 0.73 130.51 REMARK 500 5 THR A 127 -36.48 -34.20 REMARK 500 5 ASN A 128 111.27 177.59 REMARK 500 6 THR A 110 -7.21 132.54 REMARK 500 6 GLU A 129 -146.29 -126.27 REMARK 500 7 VAL A 108 -69.46 -102.19 REMARK 500 7 THR A 110 27.64 37.82 REMARK 500 7 THR A 127 -27.90 -39.26 REMARK 500 7 ASN A 128 -56.60 -24.19 REMARK 500 8 THR A 110 19.64 119.63 REMARK 500 8 GLU A 129 30.43 -96.24 REMARK 500 9 VAL A 108 -73.19 -66.78 REMARK 500 9 THR A 110 22.51 93.29 REMARK 500 10 VAL A 108 -73.08 -56.45 REMARK 500 10 THR A 127 -81.26 -119.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 102 0.28 SIDE CHAIN REMARK 500 1 ARG A 111 0.30 SIDE CHAIN REMARK 500 1 ARG A 115 0.23 SIDE CHAIN REMARK 500 2 ARG A 102 0.20 SIDE CHAIN REMARK 500 2 ARG A 111 0.15 SIDE CHAIN REMARK 500 2 ARG A 115 0.13 SIDE CHAIN REMARK 500 3 ARG A 102 0.29 SIDE CHAIN REMARK 500 3 ARG A 115 0.30 SIDE CHAIN REMARK 500 3 ARG A 121 0.28 SIDE CHAIN REMARK 500 3 ARG A 124 0.13 SIDE CHAIN REMARK 500 4 ARG A 102 0.29 SIDE CHAIN REMARK 500 4 ARG A 111 0.28 SIDE CHAIN REMARK 500 4 ARG A 115 0.25 SIDE CHAIN REMARK 500 4 ARG A 124 0.24 SIDE CHAIN REMARK 500 5 ARG A 102 0.30 SIDE CHAIN REMARK 500 5 ARG A 111 0.30 SIDE CHAIN REMARK 500 5 ARG A 115 0.23 SIDE CHAIN REMARK 500 5 ARG A 121 0.10 SIDE CHAIN REMARK 500 6 ARG A 102 0.29 SIDE CHAIN REMARK 500 6 ARG A 115 0.15 SIDE CHAIN REMARK 500 6 ARG A 121 0.25 SIDE CHAIN REMARK 500 6 ARG A 124 0.20 SIDE CHAIN REMARK 500 7 ARG A 102 0.19 SIDE CHAIN REMARK 500 7 ARG A 111 0.15 SIDE CHAIN REMARK 500 7 ARG A 115 0.19 SIDE CHAIN REMARK 500 7 ARG A 121 0.09 SIDE CHAIN REMARK 500 7 ARG A 124 0.20 SIDE CHAIN REMARK 500 8 ARG A 102 0.25 SIDE CHAIN REMARK 500 8 ARG A 115 0.27 SIDE CHAIN REMARK 500 8 ARG A 121 0.18 SIDE CHAIN REMARK 500 8 ARG A 124 0.21 SIDE CHAIN REMARK 500 9 ARG A 102 0.30 SIDE CHAIN REMARK 500 9 ARG A 111 0.23 SIDE CHAIN REMARK 500 9 ARG A 115 0.26 SIDE CHAIN REMARK 500 9 ARG A 121 0.27 SIDE CHAIN REMARK 500 9 ARG A 124 0.08 SIDE CHAIN REMARK 500 10 ARG A 102 0.20 SIDE CHAIN REMARK 500 10 ARG A 111 0.13 SIDE CHAIN REMARK 500 10 ARG A 115 0.22 SIDE CHAIN REMARK 500 10 ARG A 124 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 106 SG REMARK 620 2 CYS A 109 SG 116.8 REMARK 620 3 HIS A 122 NE2 98.3 109.8 REMARK 620 4 HIS A 126 NE2 97.8 132.7 94.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 DBREF 1ARE A 102 130 UNP P07248 ADR1_YEAST 102 130 SEQADV 1ARE ALA A 118 UNP P07248 HIS 118 CONFLICT SEQRES 1 A 29 ARG SER PHE VAL CYS GLU VAL CYS THR ARG ALA PHE ALA SEQRES 2 A 29 ARG GLN GLU ALA LEU LYS ARG HIS TYR ARG SER HIS THR SEQRES 3 A 29 ASN GLU LYS HET ZN A 1 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 AAA GLN A 116 HIS A 126 1ALPHA AND 3/10 HELICAL H-BONDS 11 SHEET 1 BBB 2 PHE A 104 CYS A 106 0 SHEET 2 BBB 2 THR A 110 PHE A 113 -1 LINK ZN ZN A 1 SG CYS A 106 1555 1555 2.32 LINK ZN ZN A 1 SG CYS A 109 1555 1555 2.31 LINK ZN ZN A 1 NE2 HIS A 122 1555 1555 2.00 LINK ZN ZN A 1 NE2 HIS A 126 1555 1555 2.01 SITE 1 AC1 4 CYS A 106 CYS A 109 HIS A 122 HIS A 126 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000