PDB Short entry for 1AT3 HEADER SERINE PROTEASE 16-AUG-97 1AT3 TITLE HERPES SIMPLEX VIRUS TYPE II PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HERPES SIMPLEX VIRUS TYPE II PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DIISOPROPYL PHOSPHATE COVALENTLY BOUND TO ACTIVE SITE COMPND 6 SER 129 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 2; SOURCE 3 ORGANISM_COMMON: HERPES SIMPLEX VIRUS TYPE 2; SOURCE 4 ORGANISM_TAXID: 10310; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, VIRAL PROTEASE, HSV2 PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HOOG,W.W.SMITH,X.QIU,S.S.ABDEL-MEGUID REVDAT 6 02-AUG-23 1AT3 1 REMARK LINK REVDAT 5 07-MAR-18 1AT3 1 REMARK REVDAT 4 13-JUL-11 1AT3 1 VERSN REVDAT 3 24-FEB-09 1AT3 1 VERSN REVDAT 2 01-APR-03 1AT3 1 JRNL REVDAT 1 14-OCT-98 1AT3 0 JRNL AUTH S.S.HOOG,W.W.SMITH,X.QIU,C.A.JANSON,B.HELLMIG,M.S.MCQUENEY, JRNL AUTH 2 K.O'DONNELL,D.O'SHANNESSY,A.G.DILELLA,C.DEBOUCK, JRNL AUTH 3 S.S.ABDEL-MEGUID JRNL TITL ACTIVE SITE CAVITY OF HERPESVIRUS PROTEASES REVEALED BY THE JRNL TITL 2 CRYSTAL STRUCTURE OF HERPES SIMPLEX VIRUS PROTEASE/INHIBITOR JRNL TITL 3 COMPLEX. JRNL REF BIOCHEMISTRY V. 36 14023 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9369473 JRNL DOI 10.1021/BI9712697 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.6 REMARK 3 NUMBER OF REFLECTIONS : 14605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1475 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1064 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.490 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.110 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.340 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : RESTRAINED REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.227 ; 50 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; 2 REMARK 3 GROUP 2 POSITIONAL (A) : 0 ; NULL REMARK 3 GROUP 2 B-FACTOR (A**2) : 0 ; NULL REMARK 3 GROUP 3 POSITIONAL (A) : 0 ; NULL REMARK 3 GROUP 3 B-FACTOR (A**2) : 0 ; NULL REMARK 3 GROUP 4 POSITIONAL (A) : 0 ; NULL REMARK 3 GROUP 4 B-FACTOR (A**2) : 0 ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PAHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-96 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : SIEMENS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : 0.24000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR, MIR REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: 1VZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.86000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.86000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.72000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.43000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 MET A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 ASP A 16 REMARK 465 PHE A 104 REMARK 465 GLU A 105 REMARK 465 ARG A 106 REMARK 465 ARG A 107 REMARK 465 GLY A 108 REMARK 465 PRO A 109 REMARK 465 ALA A 110 REMARK 465 ARG A 134 REMARK 465 ARG A 135 REMARK 465 GLY A 136 REMARK 465 ASP A 137 REMARK 465 GLU A 138 REMARK 465 VAL A 139 REMARK 465 PRO A 140 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 MET B 6 REMARK 465 ARG B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 ALA B 12 REMARK 465 PRO B 13 REMARK 465 LEU B 14 REMARK 465 PRO B 15 REMARK 465 ASP B 16 REMARK 465 PHE B 104 REMARK 465 GLU B 105 REMARK 465 ARG B 106 REMARK 465 ARG B 107 REMARK 465 GLY B 108 REMARK 465 PRO B 109 REMARK 465 ALA B 110 REMARK 465 ARG B 134 REMARK 465 ARG B 135 REMARK 465 GLY B 136 REMARK 465 ASP B 137 REMARK 465 GLU B 138 REMARK 465 VAL B 139 REMARK 465 PRO B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 103 CG1 CG2 CD1 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 PRO A 141 CG CD REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 103 CG1 CG2 CD1 REMARK 470 LEU B 111 CG CD1 CD2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 PRO B 141 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 65 CB CYS A 65 SG -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 35 171.46 -52.73 REMARK 500 HIS A 61 -0.41 46.38 REMARK 500 ARG A 62 93.42 -69.20 REMARK 500 ALA A 99 97.70 -66.18 REMARK 500 SER A 100 55.37 -90.38 REMARK 500 ALA A 102 -64.54 -97.31 REMARK 500 SER A 112 -75.55 -141.90 REMARK 500 ARG A 113 -101.59 -167.96 REMARK 500 LEU A 125 69.15 -119.24 REMARK 500 ARG A 143 -8.50 -56.70 REMARK 500 HIS A 177 62.09 -100.09 REMARK 500 ALA A 196 -75.60 -65.19 REMARK 500 LEU A 197 30.93 -71.16 REMARK 500 ALA A 203 75.10 -154.92 REMARK 500 ASP A 225 84.82 44.77 REMARK 500 GLN A 246 36.53 -83.72 REMARK 500 ALA B 28 149.66 -176.73 REMARK 500 PRO B 35 169.41 -49.83 REMARK 500 ASP B 60 55.02 38.89 REMARK 500 HIS B 61 -2.61 53.16 REMARK 500 SER B 100 52.31 -90.21 REMARK 500 SER B 112 -52.62 -128.38 REMARK 500 ARG B 113 -100.28 -169.87 REMARK 500 ARG B 143 -7.66 -56.27 REMARK 500 HIS B 177 58.75 -91.20 REMARK 500 ALA B 196 -75.03 -63.29 REMARK 500 LEU B 197 30.91 -71.97 REMARK 500 ASP B 225 -49.24 67.55 REMARK 500 ARG B 226 -50.73 59.38 REMARK 500 GLN B 246 42.40 -77.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 157 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NOVEL ACTIVE SITE TRIAD SER 129, HIS 61 AND HIS REMARK 800 148. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DFP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DFP B 300 DBREF 1AT3 A 1 247 UNP Q69527 Q69527_HHV2 1 247 DBREF 1AT3 B 1 247 UNP Q69527 Q69527_HHV2 1 247 SEQRES 1 A 247 MET ALA SER ALA GLU MET ARG GLU ARG LEU GLU ALA PRO SEQRES 2 A 247 LEU PRO ASP ARG ALA VAL PRO ILE TYR VAL ALA GLY PHE SEQRES 3 A 247 LEU ALA LEU TYR ASP SER GLY ASP PRO GLY GLU LEU ALA SEQRES 4 A 247 LEU ASP PRO ASP THR VAL ARG ALA ALA LEU PRO PRO GLU SEQRES 5 A 247 ASN PRO LEU PRO ILE ASN VAL ASP HIS ARG ALA ARG CYS SEQRES 6 A 247 GLU VAL GLY ARG VAL LEU ALA VAL VAL ASN ASP PRO ARG SEQRES 7 A 247 GLY PRO PHE PHE VAL GLY LEU ILE ALA CYS VAL GLN LEU SEQRES 8 A 247 GLU ARG VAL LEU GLU THR ALA ALA SER ALA ALA ILE PHE SEQRES 9 A 247 GLU ARG ARG GLY PRO ALA LEU SER ARG GLU GLU ARG LEU SEQRES 10 A 247 LEU TYR LEU ILE THR ASN TYR LEU PRO SER VAL SER LEU SEQRES 11 A 247 SER THR LYS ARG ARG GLY ASP GLU VAL PRO PRO ASP ARG SEQRES 12 A 247 THR LEU PHE ALA HIS VAL ALA LEU CYS ALA ILE GLY ARG SEQRES 13 A 247 ARG LEU GLY THR ILE VAL THR TYR ASP THR SER LEU ASP SEQRES 14 A 247 ALA ALA ILE ALA PRO PHE ARG HIS LEU ASP PRO ALA THR SEQRES 15 A 247 ARG GLU GLY VAL ARG ARG GLU ALA ALA GLU ALA GLU LEU SEQRES 16 A 247 ALA LEU ALA GLY ARG THR TRP ALA PRO GLY VAL GLU ALA SEQRES 17 A 247 LEU THR HIS THR LEU LEU SER THR ALA VAL ASN ASN MET SEQRES 18 A 247 MET LEU ARG ASP ARG TRP SER LEU VAL ALA GLU ARG ARG SEQRES 19 A 247 ARG GLN ALA GLY ILE ALA GLY HIS THR TYR LEU GLN ALA SEQRES 1 B 247 MET ALA SER ALA GLU MET ARG GLU ARG LEU GLU ALA PRO SEQRES 2 B 247 LEU PRO ASP ARG ALA VAL PRO ILE TYR VAL ALA GLY PHE SEQRES 3 B 247 LEU ALA LEU TYR ASP SER GLY ASP PRO GLY GLU LEU ALA SEQRES 4 B 247 LEU ASP PRO ASP THR VAL ARG ALA ALA LEU PRO PRO GLU SEQRES 5 B 247 ASN PRO LEU PRO ILE ASN VAL ASP HIS ARG ALA ARG CYS SEQRES 6 B 247 GLU VAL GLY ARG VAL LEU ALA VAL VAL ASN ASP PRO ARG SEQRES 7 B 247 GLY PRO PHE PHE VAL GLY LEU ILE ALA CYS VAL GLN LEU SEQRES 8 B 247 GLU ARG VAL LEU GLU THR ALA ALA SER ALA ALA ILE PHE SEQRES 9 B 247 GLU ARG ARG GLY PRO ALA LEU SER ARG GLU GLU ARG LEU SEQRES 10 B 247 LEU TYR LEU ILE THR ASN TYR LEU PRO SER VAL SER LEU SEQRES 11 B 247 SER THR LYS ARG ARG GLY ASP GLU VAL PRO PRO ASP ARG SEQRES 12 B 247 THR LEU PHE ALA HIS VAL ALA LEU CYS ALA ILE GLY ARG SEQRES 13 B 247 ARG LEU GLY THR ILE VAL THR TYR ASP THR SER LEU ASP SEQRES 14 B 247 ALA ALA ILE ALA PRO PHE ARG HIS LEU ASP PRO ALA THR SEQRES 15 B 247 ARG GLU GLY VAL ARG ARG GLU ALA ALA GLU ALA GLU LEU SEQRES 16 B 247 ALA LEU ALA GLY ARG THR TRP ALA PRO GLY VAL GLU ALA SEQRES 17 B 247 LEU THR HIS THR LEU LEU SER THR ALA VAL ASN ASN MET SEQRES 18 B 247 MET LEU ARG ASP ARG TRP SER LEU VAL ALA GLU ARG ARG SEQRES 19 B 247 ARG GLN ALA GLY ILE ALA GLY HIS THR TYR LEU GLN ALA HET DFP A 300 10 HET DFP B 300 10 HETNAM DFP DIISOPROPYL PHOSPHONATE FORMUL 3 DFP 2(C6 H15 O3 P) FORMUL 5 HOH *43(H2 O) HELIX 1 1 PRO A 42 ALA A 48 1 7 HELIX 2 2 VAL A 89 ALA A 98 1 10 HELIX 3 3 GLU A 114 TYR A 124 1 11 HELIX 4 4 LEU A 168 ILE A 172 1 5 HELIX 5 5 PRO A 180 ALA A 196 1 17 HELIX 6 6 VAL A 206 ASN A 220 1 15 HELIX 7 7 ARG A 226 GLN A 236 1 11 HELIX 8 8 PRO B 42 ALA B 48 1 7 HELIX 9 9 VAL B 89 ALA B 98 1 10 HELIX 10 10 GLU B 114 TYR B 124 1 11 HELIX 11 11 LEU B 168 ALA B 173 1 6 HELIX 12 12 PRO B 180 ALA B 196 1 17 HELIX 13 13 VAL B 206 ASN B 219 1 14 HELIX 14 14 TRP B 227 ALA B 237 1 11 SHEET 1 A 7 THR A 163 ASP A 165 0 SHEET 2 A 7 ILE A 21 PHE A 26 -1 N ALA A 24 O THR A 163 SHEET 3 A 7 GLY A 79 ILE A 86 -1 N ILE A 86 O ILE A 21 SHEET 4 A 7 GLU A 66 ASP A 76 -1 N ASP A 76 O GLY A 79 SHEET 5 A 7 LEU A 55 VAL A 59 -1 N ILE A 57 O VAL A 67 SHEET 6 A 7 PHE A 146 CYS A 152 1 N VAL A 149 O ASN A 58 SHEET 7 A 7 SER A 127 THR A 132 -1 N SER A 131 O ALA A 147 SHEET 1 B 7 VAL B 162 ASP B 165 0 SHEET 2 B 7 ILE B 21 PHE B 26 -1 N ALA B 24 O THR B 163 SHEET 3 B 7 GLY B 79 ILE B 86 -1 N ILE B 86 O ILE B 21 SHEET 4 B 7 GLU B 66 ASP B 76 -1 N ASP B 76 O GLY B 79 SHEET 5 B 7 LEU B 55 VAL B 59 -1 N ILE B 57 O VAL B 67 SHEET 6 B 7 PHE B 146 CYS B 152 1 N VAL B 149 O PRO B 56 SHEET 7 B 7 SER B 127 THR B 132 -1 N SER B 131 O ALA B 147 LINK OG SER A 129 P DFP A 300 1555 1555 1.58 LINK OG SER B 129 P DFP B 300 1555 1555 1.63 CISPEP 1 LEU A 49 PRO A 50 0 -0.49 CISPEP 2 LEU B 49 PRO B 50 0 -0.42 SITE 1 ACT 3 SER A 129 HIS A 61 HIS A 148 SITE 1 AC1 5 LEU A 38 SER A 129 LEU A 130 ARG A 156 SITE 2 AC1 5 HOH A 303 SITE 1 AC2 6 LEU B 38 HIS B 61 SER B 129 LEU B 130 SITE 2 AC2 6 ARG B 156 HOH B 330 CRYST1 71.720 87.430 77.280 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011438 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012940 0.00000 MTRIX1 1 0.931609 0.050040 0.360000 -8.01720 1 MTRIX2 1 0.064230 -0.997555 -0.027556 46.20170 1 MTRIX3 1 0.357741 0.048794 -0.932545 34.65840 1