PDB Short entry for 1ATH HEADER HUMAN ANTITHROMBIN-III 14-DEC-93 1ATH TITLE THE INTACT AND CLEAVED HUMAN ANTITHROMBIN III COMPLEX AS A MODEL FOR TITLE 2 SERPIN-PROTEINASE INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTITHROMBIN III; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS HUMAN ANTITHROMBIN-III EXPDTA X-RAY DIFFRACTION AUTHOR H.A.SCHREUDER,W.G.J.HOL REVDAT 4 29-NOV-17 1ATH 1 HELIX REVDAT 3 24-FEB-09 1ATH 1 VERSN REVDAT 2 01-APR-03 1ATH 1 JRNL REVDAT 1 07-FEB-95 1ATH 0 JRNL AUTH H.A.SCHREUDER,B.DE BOER,R.DIJKEMA,J.MULDERS,H.J.THEUNISSEN, JRNL AUTH 2 P.D.GROOTENHUIS,W.G.HOL JRNL TITL THE INTACT AND CLEAVED HUMAN ANTITHROMBIN III COMPLEX AS A JRNL TITL 2 MODEL FOR SERPIN-PROTEINASE INTERACTIONS. JRNL REF NAT.STRUCT.BIOL. V. 1 48 1994 JRNL REFN ISSN 1072-8368 JRNL PMID 7656006 JRNL DOI 10.1038/NSB0194-48 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.A.SCHREUDER,B.DE BOER,S.PRONK,W.G.J.HOL,R.DIJKEMA, REMARK 1 AUTH 2 J.MULDERS,H.J.M.THEUNISSEN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF HUMAN REMARK 1 TITL 2 ANTITHROMBIN III REMARK 1 REF J.MOL.BIOL. V. 229 249 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6002 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 3.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ATH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.58500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN *A* WHEN APPLIED TO REMARK 300 CHAIN *B*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 PRO A 12 REMARK 465 ARG A 13 REMARK 465 ASP A 14 REMARK 465 ILE A 15 REMARK 465 PRO A 16 REMARK 465 MET A 17 REMARK 465 ASN A 18 REMARK 465 PRO A 19 REMARK 465 MET A 20 REMARK 465 SER A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 GLU A 32 REMARK 465 ASP A 33 REMARK 465 GLU A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 GLN A 38 REMARK 465 LYS A 39 REMARK 465 ILE A 40 REMARK 465 PRO A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 43 REMARK 465 THR A 44 REMARK 465 ASN A 45 REMARK 465 LYS A 133 REMARK 465 ALA A 134 REMARK 465 ASN A 135 REMARK 465 LYS A 136 REMARK 465 LYS A 432 REMARK 465 HIS B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 VAL B 5 REMARK 465 ASP B 6 REMARK 465 ILE B 7 REMARK 465 CYS B 8 REMARK 465 THR B 9 REMARK 465 ALA B 10 REMARK 465 LYS B 11 REMARK 465 PRO B 12 REMARK 465 ARG B 13 REMARK 465 ASP B 14 REMARK 465 ILE B 15 REMARK 465 PRO B 16 REMARK 465 MET B 17 REMARK 465 ASN B 18 REMARK 465 ARG B 24 REMARK 465 SER B 25 REMARK 465 PRO B 26 REMARK 465 GLU B 27 REMARK 465 LYS B 28 REMARK 465 LYS B 29 REMARK 465 ALA B 30 REMARK 465 THR B 31 REMARK 465 GLU B 32 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 465 SER B 36 REMARK 465 GLU B 37 REMARK 465 GLN B 38 REMARK 465 LYS B 39 REMARK 465 ILE B 40 REMARK 465 PRO B 41 REMARK 465 GLU B 42 REMARK 465 ALA B 43 REMARK 465 THR B 44 REMARK 465 ASN B 45 REMARK 465 ARG B 46 REMARK 465 ARG B 47 REMARK 465 SER B 112 REMARK 465 GLU B 113 REMARK 465 LYS B 114 REMARK 465 THR B 115 REMARK 465 LYS B 133 REMARK 465 ALA B 134 REMARK 465 ASN B 135 REMARK 465 LYS B 136 REMARK 465 SER B 137 REMARK 465 GLU B 289 REMARK 465 LYS B 290 REMARK 465 SER B 291 REMARK 465 ALA B 356 REMARK 465 GLU B 357 REMARK 465 GLY B 358 REMARK 465 ARG B 359 REMARK 465 ASP B 360 REMARK 465 ASP B 361 REMARK 465 PRO B 397 REMARK 465 ASN B 398 REMARK 465 ARG B 399 REMARK 465 VAL B 400 REMARK 465 THR B 401 REMARK 465 PHE B 402 REMARK 465 LYS B 403 REMARK 465 ALA B 404 REMARK 465 VAL B 431 REMARK 465 LYS B 432 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 23 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 294 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 65 NE2 HIS A 65 CD2 -0.068 REMARK 500 HIS A 120 NE2 HIS A 120 CD2 -0.074 REMARK 500 HIS A 319 NE2 HIS A 319 CD2 -0.075 REMARK 500 HIS A 369 NE2 HIS A 369 CD2 -0.077 REMARK 500 HIS B 120 NE2 HIS B 120 CD2 -0.074 REMARK 500 HIS B 319 NE2 HIS B 319 CD2 -0.074 REMARK 500 HIS B 369 NE2 HIS B 369 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TRP A 49 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 49 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 LEU A 78 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP A 149 CA - C - N ANGL. DEV. = -17.0 DEGREES REMARK 500 TRP A 189 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP A 189 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP A 225 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 225 CB - CG - CD1 ANGL. DEV. = -9.1 DEGREES REMARK 500 TRP A 225 CE2 - CD2 - CG ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP A 225 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR A 234 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP A 243 CA - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TRP A 307 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 307 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 399 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 CYS A 430 CA - CB - SG ANGL. DEV. = -11.9 DEGREES REMARK 500 TRP B 49 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP B 49 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLU B 104 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 TRP B 189 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP B 189 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP B 225 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B 225 CB - CG - CD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 TRP B 225 CE2 - CD2 - CG ANGL. DEV. = -6.5 DEGREES REMARK 500 TRP B 225 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 CYS B 247 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP B 307 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP B 307 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ILE B 390 CA - C - N ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 8.57 52.30 REMARK 500 ASN A 96 -112.53 40.70 REMARK 500 LYS A 107 14.17 56.11 REMARK 500 TYR A 131 53.16 -114.41 REMARK 500 ASP A 149 124.71 -177.95 REMARK 500 LYS A 150 69.81 -167.51 REMARK 500 ILE A 198 82.19 66.46 REMARK 500 SER A 204 -86.70 176.18 REMARK 500 GLU A 209 2.91 -60.20 REMARK 500 VAL A 212 -73.62 -101.26 REMARK 500 ALA A 264 136.94 -31.71 REMARK 500 ASP A 277 34.98 -67.49 REMARK 500 LEU A 299 71.44 -69.81 REMARK 500 LEU A 351 66.75 -119.23 REMARK 500 ASP A 361 53.74 -153.58 REMARK 500 GLU A 377 -25.81 -35.05 REMARK 500 SER A 380 74.94 -105.59 REMARK 500 CYS B 21 60.19 28.40 REMARK 500 ILE B 22 95.51 -64.28 REMARK 500 ASN B 96 -105.93 36.84 REMARK 500 GLU B 195 18.26 50.99 REMARK 500 SER B 204 -76.44 175.82 REMARK 500 ASP B 243 47.79 -88.40 REMARK 500 GLU B 310 34.94 -90.91 REMARK 500 LYS B 332 -74.02 -50.16 REMARK 500 SER B 349 85.66 -60.05 REMARK 500 LYS B 350 76.64 -68.77 REMARK 500 LEU B 351 75.71 -110.44 REMARK 500 ILE B 390 -92.47 -83.22 REMARK 500 ARG B 393 125.58 -39.47 REMARK 500 ARG B 406 -76.51 -124.70 REMARK 500 ALA B 427 -77.82 -118.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 158 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 SHEETS A AND A2 ARE PARTIALLY OPENED (SEE NATURE STRUCTURAL REMARK 700 BIOLOGY PAPER). ONLY TWO RESIDUES OF STRAND 4A (THE REMARK 700 REACTIVE SITE LOOP) ARE INSERTED IN SHEETS A AND A2. REMARK 700 STRANDS 3A AND 5A MAKE DIRECT PARALLEL CONTACTS AT THE REMARK 700 OTHER SIDE OF THE SHEET. THESE REGIONS AND THE REMARK 700 REGISTRATION ARE GIVEN BELOW: REMARK 700 STRAND 3 LEU 213 ASN 217 0 REMARK 700 STRAND 5 PHE 368 VAL 375 +1 LEU 215 O - PHE 368 N. REMARK 700 SHEETS C AND C2: PART OF THESE SHEETS IS STRONGLY TWISTED. REMARK 700 EACH OF THESE SHEETS ALSO CONTAINS A STRAND (COMPRISING REMARK 700 RESIDUES 400 - 403 FOR SHEET C, 387 - 390 FOR SHEET C2) REMARK 700 THAT BELONGS TO A DIFFERENT MOLECULE. THESE STRANDS ARE, IN REMARK 700 FACT, THE REACTIVE SITE LOOP IN THE 'ACTIVE CONFORMATION'. REMARK 700 BECAUSE OF THE PDB REPRESENTATION OF SHEETS IT IS NOT REMARK 700 POSSIBLE TO INCLUDE THESE STRANDS ON SHEET RECORDS BELOW. REMARK 700 THE HYDROGEN BONDING LADDERS OF SHEETS B (AND B2) AND C REMARK 700 (AND C2) OVERLAP IN ONE CORNER NEAR RESIDUES 812 - 813. REMARK 700 THE ORIENTATION OF THE SHEETS IS, HOWEVER, SUFFICIENTLY REMARK 700 DIFFERENT TO CALL THEM SEPARATE SHEETS. THE ORIENTATION OF REMARK 700 RESIDUES 812 - 813 MOST CLOSELY MATCHES SHEET B (AND B2). REMARK 700 THEY HAVE BEEN NAMED STRAND 0 IN ORDER TO REMAIN CONSISTENT REMARK 700 WITH EXISTING NOMENCLATURE [SEE E.G. J. MOL. BIOL. 232 REMARK 700 (1993), 223 - 241]. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: P1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CLEAVAGE SITE BY SERINE PROTEASES LIKE THROMBIN DBREF 1ATH A 1 432 UNP P01008 ANT3_HUMAN 33 464 DBREF 1ATH B 1 432 UNP P01008 ANT3_HUMAN 33 464 SEQRES 1 A 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 A 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 A 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 A 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 A 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 A 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 A 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 A 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 A 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 A 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 A 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 A 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 A 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 A 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 A 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 A 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 A 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 A 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 A 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 A 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 A 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 A 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 A 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 A 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 A 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 A 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 A 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 A 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 A 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 A 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 A 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 A 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 A 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 A 432 CYS VAL LYS SEQRES 1 B 432 HIS GLY SER PRO VAL ASP ILE CYS THR ALA LYS PRO ARG SEQRES 2 B 432 ASP ILE PRO MET ASN PRO MET CYS ILE TYR ARG SER PRO SEQRES 3 B 432 GLU LYS LYS ALA THR GLU ASP GLU GLY SER GLU GLN LYS SEQRES 4 B 432 ILE PRO GLU ALA THR ASN ARG ARG VAL TRP GLU LEU SER SEQRES 5 B 432 LYS ALA ASN SER ARG PHE ALA THR THR PHE TYR GLN HIS SEQRES 6 B 432 LEU ALA ASP SER LYS ASN ASP ASN ASP ASN ILE PHE LEU SEQRES 7 B 432 SER PRO LEU SER ILE SER THR ALA PHE ALA MET THR LYS SEQRES 8 B 432 LEU GLY ALA CYS ASN ASP THR LEU GLN GLN LEU MET GLU SEQRES 9 B 432 VAL PHE LYS PHE ASP THR ILE SER GLU LYS THR SER ASP SEQRES 10 B 432 GLN ILE HIS PHE PHE PHE ALA LYS LEU ASN CYS ARG LEU SEQRES 11 B 432 TYR ARG LYS ALA ASN LYS SER SER LYS LEU VAL SER ALA SEQRES 12 B 432 ASN ARG LEU PHE GLY ASP LYS SER LEU THR PHE ASN GLU SEQRES 13 B 432 THR TYR GLN ASP ILE SER GLU LEU VAL TYR GLY ALA LYS SEQRES 14 B 432 LEU GLN PRO LEU ASP PHE LYS GLU ASN ALA GLU GLN SER SEQRES 15 B 432 ARG ALA ALA ILE ASN LYS TRP VAL SER ASN LYS THR GLU SEQRES 16 B 432 GLY ARG ILE THR ASP VAL ILE PRO SER GLU ALA ILE ASN SEQRES 17 B 432 GLU LEU THR VAL LEU VAL LEU VAL ASN THR ILE TYR PHE SEQRES 18 B 432 LYS GLY LEU TRP LYS SER LYS PHE SER PRO GLU ASN THR SEQRES 19 B 432 ARG LYS GLU LEU PHE TYR LYS ALA ASP GLY GLU SER CYS SEQRES 20 B 432 SER ALA SER MET MET TYR GLN GLU GLY LYS PHE ARG TYR SEQRES 21 B 432 ARG ARG VAL ALA GLU GLY THR GLN VAL LEU GLU LEU PRO SEQRES 22 B 432 PHE LYS GLY ASP ASP ILE THR MET VAL LEU ILE LEU PRO SEQRES 23 B 432 LYS PRO GLU LYS SER LEU ALA LYS VAL GLU LYS GLU LEU SEQRES 24 B 432 THR PRO GLU VAL LEU GLN GLU TRP LEU ASP GLU LEU GLU SEQRES 25 B 432 GLU MET MET LEU VAL VAL HIS MET PRO ARG PHE ARG ILE SEQRES 26 B 432 GLU ASP GLY PHE SER LEU LYS GLU GLN LEU GLN ASP MET SEQRES 27 B 432 GLY LEU VAL ASP LEU PHE SER PRO GLU LYS SER LYS LEU SEQRES 28 B 432 PRO GLY ILE VAL ALA GLU GLY ARG ASP ASP LEU TYR VAL SEQRES 29 B 432 SER ASP ALA PHE HIS LYS ALA PHE LEU GLU VAL ASN GLU SEQRES 30 B 432 GLU GLY SER GLU ALA ALA ALA SER THR ALA VAL VAL ILE SEQRES 31 B 432 ALA GLY ARG SER LEU ASN PRO ASN ARG VAL THR PHE LYS SEQRES 32 B 432 ALA ASN ARG PRO PHE LEU VAL PHE ILE ARG GLU VAL PRO SEQRES 33 B 432 LEU ASN THR ILE ILE PHE MET GLY ARG VAL ALA ASN PRO SEQRES 34 B 432 CYS VAL LYS HELIX 1 1A ARG A 46 ASP A 68 1 23 HELIX 2 1B PRO A 80 LYS A 91 1 12 HELIX 3 1C ASN A 96 VAL A 105 1 10 HELIX 4 1C1 LYS A 107 THR A 110 5 4 HELIX 5 1D SER A 116 TYR A 131 1 16 HELIX 6 1E GLU A 156 TYR A 166 1 11 HELIX 7 1F ALA A 179 LYS A 193 1 15 HELIX 8 1F1 PRO A 231 THR A 234 5 4 HELIX 9 1G LEU A 292 GLU A 298 1 7 HELIX 10 1H PRO A 301 ASP A 309 1 9 HELIX 11 1I LEU A 331 ASP A 337 1 7 HELIX 12 1I1 ASP A 342 PHE A 344 5 3 HELIX 13 2A VAL B 48 ASP B 68 1 21 HELIX 14 2B PRO B 80 THR B 90 1 11 HELIX 15 2B1 LYS B 91 GLY B 93 5 3 HELIX 16 2C ASN B 96 GLU B 104 1 9 HELIX 17 2C1 PHE B 108 THR B 110 5 3 HELIX 18 2D GLN B 118 LEU B 130 1 13 HELIX 19 2E GLU B 156 TYR B 166 1 11 HELIX 20 2F ASN B 178 THR B 194 1 17 HELIX 21 2F1 PRO B 231 ASN B 233 5 3 HELIX 22 2G ALA B 293 GLU B 298 1 6 HELIX 23 2H THR B 300 GLU B 310 1 11 HELIX 24 2I LEU B 331 MET B 338 1 8 HELIX 25 2I1 ASP B 342 PHE B 344 5 3 SHEET 1 A 6 LEU A 170 GLN A 171 0 SHEET 2 A 6 SER A 138 GLY A 148 1 N GLY A 148 O GLN A 171 SHEET 3 A 6 LEU A 213 LEU A 224 -1 N VAL A 216 O ARG A 145 SHEET 4 A 6 GLY A 379 SER A 380 -1 N SER A 380 O GLY A 223 SHEET 5 A 6 VAL A 364 VAL A 375 -1 N ASN A 376 O GLY A 379 SHEET 6 A 6 PHE A 323 SER A 330 -1 N PHE A 329 O HIS A 369 SHEET 1 B 6 ARG A 259 VAL A 263 0 SHEET 2 B 6 THR A 267 PRO A 273 -1 N VAL A 269 O ARG A 261 SHEET 3 B 6 ILE A 279 LEU A 285 -1 N LEU A 285 O GLN A 268 SHEET 4 B 6 PHE A 408 GLU A 414 -1 N LEU A 409 O ILE A 284 SHEET 5 B 6 THR A 419 VAL A 426 -1 N VAL A 426 O PHE A 408 SHEET 6 B 6 ASN A 75 SER A 79 -1 N ILE A 76 O ARG A 425 SHEET 1 C 3 MET A 314 PRO A 321 0 SHEET 2 C 3 SER A 246 PHE A 258 -1 N GLY A 256 O LEU A 316 SHEET 3 C 3 THR A 234 TYR A 240 -1 N ARG A 235 O MET A 251 SHEET 1 D 2 LEU A 152 PHE A 154 0 SHEET 2 D 2 ILE A 354 ALA A 356 -1 N VAL A 355 O THR A 153 SHEET 1 A2 6 LYS B 169 LEU B 173 0 SHEET 2 A2 6 LYS B 139 ASP B 149 1 N LEU B 146 O LYS B 169 SHEET 3 A2 6 LEU B 213 LEU B 224 -1 N THR B 218 O ALA B 143 SHEET 4 A2 6 GLY B 379 VAL B 389 -1 N THR B 386 O ASN B 217 SHEET 5 A2 6 ASP B 366 VAL B 375 -1 N LYS B 370 O SER B 385 SHEET 6 A2 6 PHE B 323 SER B 330 -1 N PHE B 329 O HIS B 369 SHEET 1 B2 7 GLU B 312 GLU B 313 0 SHEET 2 B2 7 ARG B 259 VAL B 263 -1 N TYR B 260 O GLU B 312 SHEET 3 B2 7 THR B 267 PRO B 273 -1 N VAL B 269 O ARG B 261 SHEET 4 B2 7 ILE B 279 LEU B 285 -1 N LEU B 283 O LEU B 270 SHEET 5 B2 7 PHE B 408 GLU B 414 -1 N PHE B 411 O VAL B 282 SHEET 6 B2 7 THR B 419 VAL B 426 -1 N GLY B 424 O VAL B 410 SHEET 7 B2 7 ILE B 76 LEU B 78 -1 N LEU B 78 O MET B 423 SHEET 1 C2 3 MET B 314 PRO B 321 0 SHEET 2 C2 3 GLU B 245 PHE B 258 -1 N GLY B 256 O LEU B 316 SHEET 3 C2 3 ARG B 235 LYS B 241 -1 N GLU B 237 O ALA B 249 SSBOND 1 CYS A 8 CYS A 128 1555 1555 2.03 SSBOND 2 CYS A 21 CYS A 95 1555 1555 2.01 SSBOND 3 CYS A 247 CYS A 430 1555 1555 2.01 SSBOND 4 CYS B 21 CYS B 95 1555 1555 2.01 SSBOND 5 CYS B 247 CYS B 430 1555 1555 2.02 SITE 1 P1 2 ARG A 393 ARG B 393 CRYST1 90.950 101.170 69.519 90.00 105.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010995 0.000000 0.003144 0.00000 SCALE2 0.000000 0.009884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014961 0.00000 MTRIX1 1 -0.049050 -0.993178 0.105794 56.26168 1 MTRIX2 1 -0.989684 0.034054 -0.139165 83.50221 1 MTRIX3 1 0.134613 -0.111529 -0.984602 50.16138 1