PDB Short entry for 1ATY HEADER MEMBRANE PROTEIN 05-OCT-94 1ATY TITLE DETERMINATION OF LOCAL PROTEIN STRUCTURE BY SPIN LABEL DIFFERENCE 2D TITLE 2 NMR: THE REGION NEIGHBORING ASP61 OF SUBUNIT C OF THE F1FO ATP TITLE 3 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: F1F0 ATP SYNTHASE (SUBUNIT C); COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.34; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: UNCE; SOURCE 5 EXPRESSION_SYSTEM_PLASMID: PCP35 (PBR322 DERIVATIV KEYWDS MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 9 AUTHOR M.E.GIRVIN,R.H.FILLINGAME REVDAT 3 16-FEB-22 1ATY 1 REMARK SEQADV REVDAT 2 24-FEB-09 1ATY 1 VERSN REVDAT 1 20-DEC-94 1ATY 0 JRNL AUTH M.E.GIRVIN,R.H.FILLINGAME JRNL TITL DETERMINATION OF LOCAL PROTEIN STRUCTURE BY SPIN LABEL JRNL TITL 2 DIFFERENCE 2D NMR: THE REGION NEIGHBORING ASP61 OF SUBUNIT C JRNL TITL 3 OF THE F1F0 ATP SYNTHASE. JRNL REF BIOCHEMISTRY V. 34 1635 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7849023 JRNL DOI 10.1021/BI00005A020 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.E.GIRVIN,R.H.FILLINGAME REMARK 1 TITL HAIRPIN FOLDING OF SUBUNIT C OF F1FO ATP SYNTHASE: 1H REMARK 1 TITL 2 DISTANCE MEASUREMENTS TO NITROXIDE-DERIVATIZED ASPARTYL-61 REMARK 1 REF BIOCHEMISTRY V. 33 665 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.E.GIRVIN,R.H.FILLINGAME REMARK 1 TITL HELICAL STRUCTURE AND FOLDING OF SUBUNIT C OF F1FO ATP REMARK 1 TITL 2 SYNTHASE: 1H NMR RESONANCE ASSIGNMENTS AND NOE ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 32 12167 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ATY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171254. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-9 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 ASN A 5 REMARK 465 MET A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 27 REMARK 465 ILE A 28 REMARK 465 GLY A 29 REMARK 465 ILE A 30 REMARK 465 LEU A 31 REMARK 465 GLY A 32 REMARK 465 GLY A 33 REMARK 465 LYS A 34 REMARK 465 PHE A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 37 REMARK 465 GLY A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 ARG A 41 REMARK 465 GLN A 42 REMARK 465 PRO A 43 REMARK 465 ASP A 44 REMARK 465 LEU A 45 REMARK 465 ILE A 46 REMARK 465 PRO A 47 REMARK 465 LEU A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 THR A 51 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 72 N MET A 75 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 TYR A 10 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 4 TYR A 10 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 5 TYR A 10 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 6 GLY A 69 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 8 TYR A 10 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 9 GLY A 69 N - CA - C ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 10 20.75 -70.96 REMARK 500 1 MET A 16 -85.46 -33.50 REMARK 500 1 MET A 17 -73.59 -76.04 REMARK 500 1 LEU A 19 -71.53 -61.61 REMARK 500 1 ALA A 24 -79.75 -82.84 REMARK 500 1 ILE A 55 -20.98 171.01 REMARK 500 1 ASP A 61 16.11 105.05 REMARK 500 1 ILE A 63 -56.03 -21.06 REMARK 500 1 PRO A 64 -76.68 -70.86 REMARK 500 1 MET A 65 -73.08 -3.15 REMARK 500 1 MET A 75 -37.04 -32.03 REMARK 500 1 ALA A 77 40.45 -85.33 REMARK 500 1 VAL A 78 37.78 -94.85 REMARK 500 2 TYR A 10 23.57 -72.86 REMARK 500 2 MET A 16 -86.37 -51.49 REMARK 500 2 ALA A 24 -73.68 -83.93 REMARK 500 2 PHE A 53 54.87 27.55 REMARK 500 2 PHE A 54 -46.35 84.19 REMARK 500 2 VAL A 60 -77.31 -99.44 REMARK 500 2 ASP A 61 -104.52 -166.17 REMARK 500 2 ILE A 63 -63.28 -131.74 REMARK 500 2 MET A 75 -36.75 -31.60 REMARK 500 2 ALA A 77 46.16 -86.90 REMARK 500 3 TYR A 10 28.38 -77.76 REMARK 500 3 MET A 11 -63.79 -91.66 REMARK 500 3 MET A 16 -87.69 -27.29 REMARK 500 3 MET A 17 -71.01 -79.41 REMARK 500 3 LEU A 19 -71.47 -64.15 REMARK 500 3 ALA A 24 -92.21 -107.68 REMARK 500 3 PHE A 53 53.46 28.41 REMARK 500 3 PHE A 54 -45.73 83.74 REMARK 500 3 LEU A 59 -63.10 -174.18 REMARK 500 3 VAL A 60 -44.48 172.38 REMARK 500 3 ASP A 61 -111.24 -159.29 REMARK 500 3 ALA A 62 -53.73 89.15 REMARK 500 3 ILE A 63 -55.96 -18.36 REMARK 500 3 MET A 65 -56.03 -18.02 REMARK 500 3 ILE A 66 -73.36 -59.91 REMARK 500 3 LEU A 72 -64.11 -109.97 REMARK 500 3 MET A 75 -36.26 -32.72 REMARK 500 3 ALA A 77 45.49 -86.24 REMARK 500 3 VAL A 78 52.52 -95.63 REMARK 500 4 TYR A 10 7.24 -60.36 REMARK 500 4 MET A 16 -91.90 -46.28 REMARK 500 4 ALA A 25 39.14 -164.06 REMARK 500 4 PHE A 53 -132.95 -61.87 REMARK 500 4 PHE A 54 25.47 47.69 REMARK 500 4 ILE A 55 41.91 87.64 REMARK 500 4 VAL A 60 -81.39 -101.00 REMARK 500 4 ASP A 61 -140.04 -158.23 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 10 0.08 SIDE CHAIN REMARK 500 5 TYR A 10 0.06 SIDE CHAIN REMARK 500 9 TYR A 10 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1ATY A 1 79 UNP P68699 ATPL_ECOLI 1 79 SEQADV 1ATY CYS A 67 UNP P68699 ALA 67 CONFLICT SEQRES 1 A 79 MET GLU ASN LEU ASN MET ASP LEU LEU TYR MET ALA ALA SEQRES 2 A 79 ALA VAL MET MET GLY LEU ALA ALA ILE GLY ALA ALA ILE SEQRES 3 A 79 GLY ILE GLY ILE LEU GLY GLY LYS PHE LEU GLU GLY ALA SEQRES 4 A 79 ALA ARG GLN PRO ASP LEU ILE PRO LEU LEU ARG THR GLN SEQRES 5 A 79 PHE PHE ILE VAL MET GLY LEU VAL ASP ALA ILE PRO MET SEQRES 6 A 79 ILE CYS VAL GLY LEU GLY LEU TYR VAL MET PHE ALA VAL SEQRES 7 A 79 ALA HELIX 1 1 MET A 11 ALA A 25 1 15 HELIX 2 2 VAL A 56 ASP A 61 1 6 HELIX 3 3 ASP A 61 ALA A 77 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000