PDB Short entry for 1AVH HEADER CALCIUM/PHOSPHOLIPID BINDING 17-OCT-91 1AVH TITLE CRYSTAL AND MOLECULAR STRUCTURE OF HUMAN ANNEXIN V AFTER REFINEMENT. TITLE 2 IMPLICATIONS FOR STRUCTURE, MEMBRANE BINDING AND ION CHANNEL TITLE 3 FORMATION OF THE ANNEXIN FAMILY OF PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANNEXIN V; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS CALCIUM/PHOSPHOLIPID BINDING, CALCIUM-PHOSPHOLIPID BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.HUBER,R.BERENDES,A.BURGER,M.SCHNEIDER,A.KARSHIKOV,H.LUECKE, AUTHOR 2 J.ROEMISCH,E.PAQUES REVDAT 4 07-FEB-24 1AVH 1 REMARK LINK REVDAT 3 24-FEB-09 1AVH 1 VERSN REVDAT 2 01-APR-03 1AVH 1 JRNL REVDAT 1 31-JAN-94 1AVH 0 JRNL AUTH R.HUBER,R.BERENDES,A.BURGER,M.SCHNEIDER,A.KARSHIKOV, JRNL AUTH 2 H.LUECKE,J.ROMISCH,E.PAQUES JRNL TITL CRYSTAL AND MOLECULAR STRUCTURE OF HUMAN ANNEXIN V AFTER JRNL TITL 2 REFINEMENT. IMPLICATIONS FOR STRUCTURE, MEMBRANE BINDING AND JRNL TITL 3 ION CHANNEL FORMATION OF THE ANNEXIN FAMILY OF PROTEINS. JRNL REF J.MOL.BIOL. V. 223 683 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1311770 JRNL DOI 10.1016/0022-2836(92)90984-R REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.HUBER,M.SCHNEIDER,I.MAYR,J.ROEMISCH,E.-P.PAQUES REMARK 1 TITL THE CALCIUM BINDING SITES IN HUMAN ANNEXIN V BY CRYSTAL REMARK 1 TITL 2 STRUCTURE ANALYSIS AT 2.0 ANGSTROMS RESOLUTION REMARK 1 REF FEBS LETT. V. 275 15 1990 REMARK 1 REFN ISSN 0014-5793 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.HUBER,J.ROEMISCH,E.-P.PAQUES REMARK 1 TITL THE CRYSTAL AND MOLECULAR STRUCTURE OF HUMAN ANNEXIN V, AN REMARK 1 TITL 2 ANTICOAGULANT PROTEIN THAT BINDS TO CALCIUM AND MEMBRANES REMARK 1 REF EMBO J. V. 9 3867 1990 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EREF REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.319 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AVH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.50000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.50000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 64.50000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -49.40000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 85.56331 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 64.50000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 26 CE NZ REMARK 480 LYS A 29 NZ REMARK 480 LYS A 97 CD CE NZ REMARK 480 LYS A 101 CG CD CE NZ REMARK 480 SER A 135 OG REMARK 480 GLU A 169 CD OE1 OE2 REMARK 480 LYS A 290 CE NZ REMARK 480 LYS A 301 CE NZ REMARK 480 ASP A 320 N CA CB OXT REMARK 480 LYS B 29 CG CD CE NZ REMARK 480 LYS B 86 CE NZ REMARK 480 LYS B 101 CG CD CE NZ REMARK 480 ASP B 168 CG OD1 OD2 REMARK 480 LEU B 185 CG CD1 CD2 REMARK 480 LYS B 186 CG CD NZ REMARK 480 SER B 217 OG REMARK 480 GLU B 228 CG CD OE1 OE2 REMARK 480 LYS B 286 NZ REMARK 480 LYS B 290 NZ REMARK 480 LYS B 301 NZ REMARK 480 GLU B 318 CG CD OE1 OE2 REMARK 480 ASP B 319 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 867 O HOH B 884 2665 0.98 REMARK 500 O HOH A 848 O HOH B 651 2665 1.35 REMARK 500 NH1 ARG A 63 NH2 ARG A 151 3565 2.01 REMARK 500 NE2 GLN B 181 O PHE B 292 2675 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 187 NE1 TRP A 187 CE2 -0.102 REMARK 500 TRP B 187 NE1 TRP B 187 CE2 -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 271 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 25 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 117 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 PHE B 194 CB - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 ARG B 201 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 227 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 227 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 79.72 -100.49 REMARK 500 ALA A 103 71.36 -24.92 REMARK 500 ALA A 165 -103.33 -144.81 REMARK 500 MET A 214 0.93 -69.45 REMARK 500 SER A 230 -164.43 -61.78 REMARK 500 SER A 246 103.41 174.01 REMARK 500 ILE A 279 -57.32 -128.93 REMARK 500 ASP A 280 18.24 -147.56 REMARK 500 GLU B 72 -40.14 -135.68 REMARK 500 ALA B 159 28.36 42.55 REMARK 500 ALA B 165 -111.84 -131.60 REMARK 500 SER B 230 -84.33 -56.89 REMARK 500 SER B 246 117.67 -161.80 REMARK 500 ILE B 279 -77.79 -127.02 REMARK 500 GLU B 318 -71.16 -2.37 REMARK 500 ASP B 319 -132.22 -118.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 231 ASN B 232 -148.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 6 -11.08 REMARK 500 GLU A 36 10.70 REMARK 500 LYS A 70 -10.45 REMARK 500 PRO A 87 12.23 REMARK 500 LEU A 90 10.40 REMARK 500 SER A 146 -11.87 REMARK 500 ALA A 165 -13.10 REMARK 500 TRP A 187 12.50 REMARK 500 LYS A 212 -11.11 REMARK 500 ILE A 244 -10.64 REMARK 500 MET A 259 10.41 REMARK 500 GLY A 263 -11.96 REMARK 500 THR A 264 12.21 REMARK 500 ARG A 276 10.06 REMARK 500 LYS A 286 -10.86 REMARK 500 ARG A 289 10.32 REMARK 500 ASP A 303 10.99 REMARK 500 THR A 304 11.79 REMARK 500 LEU B 60 10.59 REMARK 500 PRO B 119 -10.34 REMARK 500 SER B 146 -11.74 REMARK 500 PHE B 194 17.42 REMARK 500 THR B 229 11.71 REMARK 500 SER B 230 11.05 REMARK 500 GLY B 231 13.06 REMARK 500 ARG B 276 11.08 REMARK 500 ASP B 303 10.29 REMARK 500 GLY B 317 -11.91 REMARK 500 GLU B 318 12.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CA A 322 REMARK 615 CA A 323 REMARK 615 HOH A 666 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 322 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 30 O REMARK 620 2 GLY A 32 N 68.4 REMARK 620 3 GLY A 32 O 74.9 51.2 REMARK 620 4 GLU A 72 OE1 112.2 123.4 73.5 REMARK 620 5 GLU A 72 OE2 119.4 166.0 117.4 44.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 100 O REMARK 620 2 GLY A 102 O 87.8 REMARK 620 3 GLY A 104 O 115.9 93.8 REMARK 620 4 LEU B 31 O 105.2 136.9 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 323 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 259 O REMARK 620 2 GLY A 261 O 93.6 REMARK 620 3 GLY A 263 O 80.5 74.4 REMARK 620 4 ASP A 303 OD2 69.6 156.4 86.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 28 O REMARK 620 2 GLY B 30 O 75.9 REMARK 620 3 GLY B 32 O 83.9 104.1 REMARK 620 4 GLY B 32 N 135.3 85.4 61.6 REMARK 620 5 THR B 33 OG1 96.7 171.2 70.0 96.9 REMARK 620 6 GLU B 72 OE1 76.4 124.6 119.4 144.1 56.6 REMARK 620 7 GLU B 72 OE2 55.2 83.9 135.5 161.9 95.9 41.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 322 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 259 O REMARK 620 2 GLY B 261 O 107.5 REMARK 620 3 GLY B 263 O 112.3 87.9 REMARK 620 4 ASP B 303 OD2 94.6 157.3 78.9 REMARK 620 5 ASP B 303 OD1 71.6 143.6 127.0 48.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 541 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 542 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 545 DBREF 1AVH A 2 320 UNP P08758 ANXA5_HUMAN 1 319 DBREF 1AVH B 2 320 UNP P08758 ANXA5_HUMAN 1 319 SEQRES 1 A 320 MET ALA GLN VAL LEU ARG GLY THR VAL THR ASP PHE PRO SEQRES 2 A 320 GLY PHE ASP GLU ARG ALA ASP ALA GLU THR LEU ARG LYS SEQRES 3 A 320 ALA MET LYS GLY LEU GLY THR ASP GLU GLU SER ILE LEU SEQRES 4 A 320 THR LEU LEU THR SER ARG SER ASN ALA GLN ARG GLN GLU SEQRES 5 A 320 ILE SER ALA ALA PHE LYS THR LEU PHE GLY ARG ASP LEU SEQRES 6 A 320 LEU ASP ASP LEU LYS SER GLU LEU THR GLY LYS PHE GLU SEQRES 7 A 320 LYS LEU ILE VAL ALA LEU MET LYS PRO SER ARG LEU TYR SEQRES 8 A 320 ASP ALA TYR GLU LEU LYS HIS ALA LEU LYS GLY ALA GLY SEQRES 9 A 320 THR ASN GLU LYS VAL LEU THR GLU ILE ILE ALA SER ARG SEQRES 10 A 320 THR PRO GLU GLU LEU ARG ALA ILE LYS GLN VAL TYR GLU SEQRES 11 A 320 GLU GLU TYR GLY SER SER LEU GLU ASP ASP VAL VAL GLY SEQRES 12 A 320 ASP THR SER GLY TYR TYR GLN ARG MET LEU VAL VAL LEU SEQRES 13 A 320 LEU GLN ALA ASN ARG ASP PRO ASP ALA GLY ILE ASP GLU SEQRES 14 A 320 ALA GLN VAL GLU GLN ASP ALA GLN ALA LEU PHE GLN ALA SEQRES 15 A 320 GLY GLU LEU LYS TRP GLY THR ASP GLU GLU LYS PHE ILE SEQRES 16 A 320 THR ILE PHE GLY THR ARG SER VAL SER HIS LEU ARG LYS SEQRES 17 A 320 VAL PHE ASP LYS TYR MET THR ILE SER GLY PHE GLN ILE SEQRES 18 A 320 GLU GLU THR ILE ASP ARG GLU THR SER GLY ASN LEU GLU SEQRES 19 A 320 GLN LEU LEU LEU ALA VAL VAL LYS SER ILE ARG SER ILE SEQRES 20 A 320 PRO ALA TYR LEU ALA GLU THR LEU TYR TYR ALA MET LYS SEQRES 21 A 320 GLY ALA GLY THR ASP ASP HIS THR LEU ILE ARG VAL MET SEQRES 22 A 320 VAL SER ARG SER GLU ILE ASP LEU PHE ASN ILE ARG LYS SEQRES 23 A 320 GLU PHE ARG LYS ASN PHE ALA THR SER LEU TYR SER MET SEQRES 24 A 320 ILE LYS GLY ASP THR SER GLY ASP TYR LYS LYS ALA LEU SEQRES 25 A 320 LEU LEU LEU CYS GLY GLU ASP ASP SEQRES 1 B 320 MET ALA GLN VAL LEU ARG GLY THR VAL THR ASP PHE PRO SEQRES 2 B 320 GLY PHE ASP GLU ARG ALA ASP ALA GLU THR LEU ARG LYS SEQRES 3 B 320 ALA MET LYS GLY LEU GLY THR ASP GLU GLU SER ILE LEU SEQRES 4 B 320 THR LEU LEU THR SER ARG SER ASN ALA GLN ARG GLN GLU SEQRES 5 B 320 ILE SER ALA ALA PHE LYS THR LEU PHE GLY ARG ASP LEU SEQRES 6 B 320 LEU ASP ASP LEU LYS SER GLU LEU THR GLY LYS PHE GLU SEQRES 7 B 320 LYS LEU ILE VAL ALA LEU MET LYS PRO SER ARG LEU TYR SEQRES 8 B 320 ASP ALA TYR GLU LEU LYS HIS ALA LEU LYS GLY ALA GLY SEQRES 9 B 320 THR ASN GLU LYS VAL LEU THR GLU ILE ILE ALA SER ARG SEQRES 10 B 320 THR PRO GLU GLU LEU ARG ALA ILE LYS GLN VAL TYR GLU SEQRES 11 B 320 GLU GLU TYR GLY SER SER LEU GLU ASP ASP VAL VAL GLY SEQRES 12 B 320 ASP THR SER GLY TYR TYR GLN ARG MET LEU VAL VAL LEU SEQRES 13 B 320 LEU GLN ALA ASN ARG ASP PRO ASP ALA GLY ILE ASP GLU SEQRES 14 B 320 ALA GLN VAL GLU GLN ASP ALA GLN ALA LEU PHE GLN ALA SEQRES 15 B 320 GLY GLU LEU LYS TRP GLY THR ASP GLU GLU LYS PHE ILE SEQRES 16 B 320 THR ILE PHE GLY THR ARG SER VAL SER HIS LEU ARG LYS SEQRES 17 B 320 VAL PHE ASP LYS TYR MET THR ILE SER GLY PHE GLN ILE SEQRES 18 B 320 GLU GLU THR ILE ASP ARG GLU THR SER GLY ASN LEU GLU SEQRES 19 B 320 GLN LEU LEU LEU ALA VAL VAL LYS SER ILE ARG SER ILE SEQRES 20 B 320 PRO ALA TYR LEU ALA GLU THR LEU TYR TYR ALA MET LYS SEQRES 21 B 320 GLY ALA GLY THR ASP ASP HIS THR LEU ILE ARG VAL MET SEQRES 22 B 320 VAL SER ARG SER GLU ILE ASP LEU PHE ASN ILE ARG LYS SEQRES 23 B 320 GLU PHE ARG LYS ASN PHE ALA THR SER LEU TYR SER MET SEQRES 24 B 320 ILE LYS GLY ASP THR SER GLY ASP TYR LYS LYS ALA LEU SEQRES 25 B 320 LEU LEU LEU CYS GLY GLU ASP ASP HET CA A 321 1 HET CA A 322 1 HET CA A 323 1 HET SO4 A 541 5 HET SO4 A 543 5 HET CA B 321 1 HET CA B 322 1 HET SO4 B 542 5 HET SO4 B 545 5 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 3 CA 5(CA 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 12 HOH *275(H2 O) HELIX 1 1 ASP A 16 LYS A 29 1 14 HELIX 2 2 ASP A 34 THR A 43 1 10 HELIX 3 3 SER A 46 PHE A 61 1 16 HELIX 4 4 ASP A 64 LEU A 73 1 10 HELIX 5 5 THR A 74 MET A 85 1 12 HELIX 6 6 PRO A 87 LYS A 101 1 15 HELIX 7 7 ASN A 106 ARG A 117 1 12 HELIX 8 8 THR A 118 GLY A 134 1 17 HELIX 9 9 SER A 136 THR A 145 1 10 HELIX 10 10 GLY A 147 GLN A 158 1 12 HELIX 11 11 ASP A 168 LEU A 185 1 18 HELIX 12 12 ASP A 190 ARG A 201 1 12 HELIX 13 13 SER A 202 SER A 217 1 16 HELIX 14 14 GLN A 220 ILE A 225 5 6 HELIX 15 15 GLY A 231 ILE A 247 1 17 HELIX 16 16 SER A 246 MET A 259 1 14 HELIX 17 17 ASP A 265 ARG A 276 1 12 HELIX 18 18 ASP A 280 ALA A 293 1 14 HELIX 19 19 SER A 295 THR A 304 1 10 HELIX 20 20 GLY A 306 GLY A 317 1 12 HELIX 21 21 ASP B 16 MET B 28 1 13 HELIX 22 22 ASP B 34 ARG B 45 1 12 HELIX 23 23 SER B 46 PHE B 61 1 16 HELIX 24 24 ASP B 64 SER B 71 1 8 HELIX 25 25 THR B 74 MET B 85 1 12 HELIX 26 26 PRO B 87 ALA B 99 1 13 HELIX 27 27 ASN B 106 ARG B 117 1 12 HELIX 28 28 THR B 118 TYR B 133 1 16 HELIX 29 29 SER B 136 THR B 145 1 10 HELIX 30 30 GLY B 147 GLN B 158 1 12 HELIX 31 31 ASP B 168 LEU B 185 1 18 HELIX 32 32 ASP B 190 ARG B 201 1 12 HELIX 33 33 SER B 202 GLY B 218 1 17 HELIX 34 34 GLN B 220 ILE B 225 5 6 HELIX 35 35 GLY B 231 SER B 246 1 16 HELIX 36 36 SER B 246 ALA B 258 1 13 HELIX 37 37 ASP B 265 ARG B 276 1 12 HELIX 38 38 ASP B 280 ALA B 293 1 14 HELIX 39 39 SER B 295 THR B 304 1 10 HELIX 40 40 GLY B 306 GLY B 317 1 12 LINK O GLY A 30 CA CA A 322 1555 1555 2.81 LINK N GLY A 32 CA CA A 322 1555 1555 3.31 LINK O GLY A 32 CA CA A 322 1555 1555 2.90 LINK OE1 GLU A 72 CA CA A 322 1555 1555 2.88 LINK OE2 GLU A 72 CA CA A 322 1555 1555 3.02 LINK O LEU A 100 CA CA A 321 1555 1555 3.03 LINK O GLY A 102 CA CA A 321 1555 1555 3.17 LINK O GLY A 104 CA CA A 321 1555 1555 3.17 LINK O MET A 259 CA CA A 323 1555 1555 2.98 LINK O GLY A 261 CA CA A 323 1555 1555 2.70 LINK O GLY A 263 CA CA A 323 1555 1555 2.97 LINK OD2 ASP A 303 CA CA A 323 1555 1555 2.70 LINK CA CA A 321 O LEU B 31 1555 5555 2.35 LINK O MET B 28 CA CA B 321 1555 1555 3.25 LINK O GLY B 30 CA CA B 321 1555 1555 3.33 LINK O GLY B 32 CA CA B 321 1555 1555 2.84 LINK N GLY B 32 CA CA B 321 1555 1555 2.86 LINK OG1 THR B 33 CA CA B 321 1555 1555 2.95 LINK OE1 GLU B 72 CA CA B 321 1555 1555 2.81 LINK OE2 GLU B 72 CA CA B 321 1555 1555 3.31 LINK O MET B 259 CA CA B 322 1555 1555 2.98 LINK O GLY B 261 CA CA B 322 1555 1555 2.94 LINK O GLY B 263 CA CA B 322 1555 1555 2.74 LINK OD2 ASP B 303 CA CA B 322 1555 1555 2.64 LINK OD1 ASP B 303 CA CA B 322 1555 1555 2.74 SITE 1 AC1 4 LEU A 100 GLY A 102 GLY A 104 LEU B 31 SITE 1 AC2 5 MET B 28 GLY B 30 GLY B 32 THR B 33 SITE 2 AC2 5 GLU B 72 SITE 1 AC3 4 MET B 259 GLY B 261 GLY B 263 ASP B 303 SITE 1 AC4 6 LYS A 79 HOH A 676 ALA B 262 GLY B 263 SITE 2 AC4 6 THR B 264 HOH B 787 SITE 1 AC5 4 GLY A 75 LYS A 76 HOH A 656 HOH A 819 SITE 1 AC6 4 THR A 105 ARG B 25 GLY B 30 ARG B 63 SITE 1 AC7 2 GLU B 22 ARG B 201 CRYST1 98.800 98.800 129.000 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.577350 0.000000 0.00000 ORIGX2 0.000000 1.154701 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010121 0.005844 0.000000 0.00000 SCALE2 0.000000 0.011687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007752 0.00000