PDB Short entry for 1AZK HEADER CELLULASE 18-NOV-97 1AZK TITLE THREE-DIMENSIONAL STRUCTURES OF THREE ENGINEERED CELLULOSE-BINDING TITLE 2 DOMAINS OF CELLOBIOHYDROLASE I FROM TRICHODERMA REESEI, NMR, 19 TITLE 3 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLOBIOHYDROLASE I; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CELLULOSE-BINDING DOMAIN; COMPND 5 SYNONYM: CBD; COMPND 6 EC: 3.2.1.91; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_TAXID: 51453 KEYWDS CELLULASE, NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, PROTEIN- KEYWDS 2 CARBOHYDRATE INTERACTION, CELLULOSE DEGRADATION, HYDROLASE, KEYWDS 3 GLYCOSIDASE EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR M.-L.MATTINEN REVDAT 4 03-NOV-21 1AZK 1 REMARK SEQADV REVDAT 3 24-FEB-09 1AZK 1 VERSN REVDAT 2 31-MAR-99 1AZK 1 COMPND REVDAT 1 29-APR-98 1AZK 0 JRNL AUTH M.L.MATTINEN,M.KONTTELI,J.KEROVUO,M.LINDER,A.ANNILA, JRNL AUTH 2 G.LINDEBERG,T.REINIKAINEN,T.DRAKENBERG JRNL TITL THREE-DIMENSIONAL STRUCTURES OF THREE ENGINEERED JRNL TITL 2 CELLULOSE-BINDING DOMAINS OF CELLOBIOHYDROLASE I FROM JRNL TITL 3 TRICHODERMA REESEI. JRNL REF PROTEIN SCI. V. 6 294 1997 JRNL REFN ISSN 0961-8368 JRNL PMID 9041630 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SA/MD REMARK 3 AUTHORS : CLORE,NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1AZK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171447. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 3.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TOCSY; COSY; NOESY; RELAY-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VARIAN UNITY 600 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : BIOSYM TECHNOLOGIES REMARK 210 TECHNOLOGIES, FELIX, INSIGHT II REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 CYS A 25 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 10 CYS A 8 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 10 CYS A 35 CA - CB - SG ANGL. DEV. = 8.6 DEGREES REMARK 500 16 CYS A 35 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 14 -92.42 -131.49 REMARK 500 1 THR A 24 -128.71 -129.11 REMARK 500 1 CYS A 25 62.51 179.85 REMARK 500 1 LEU A 28 -113.09 -138.10 REMARK 500 1 PRO A 30 -17.35 -47.79 REMARK 500 1 CYS A 35 76.33 -57.97 REMARK 500 2 SER A 14 -69.29 -146.34 REMARK 500 2 PRO A 16 34.73 -74.54 REMARK 500 2 VAL A 18 78.45 -65.35 REMARK 500 2 ALA A 20 73.08 -65.54 REMARK 500 2 SER A 21 109.21 -37.80 REMARK 500 2 THR A 24 -114.04 -126.03 REMARK 500 2 CYS A 25 65.35 162.30 REMARK 500 2 LEU A 28 -46.37 -138.39 REMARK 500 2 TYR A 31 -49.49 -152.82 REMARK 500 2 CYS A 35 75.53 -63.81 REMARK 500 3 SER A 3 -111.38 -66.72 REMARK 500 3 TYR A 5 94.26 89.67 REMARK 500 3 CYS A 8 20.11 -140.40 REMARK 500 3 ILE A 11 105.63 -43.39 REMARK 500 3 THR A 24 -88.41 -99.64 REMARK 500 3 CYS A 25 56.66 124.78 REMARK 500 3 CYS A 35 76.64 -67.17 REMARK 500 4 SER A 3 -102.21 -77.93 REMARK 500 4 TYR A 5 47.70 77.70 REMARK 500 4 CYS A 8 57.72 -104.04 REMARK 500 4 ILE A 11 108.25 -59.50 REMARK 500 4 TYR A 13 65.19 -109.73 REMARK 500 4 SER A 14 49.39 -70.06 REMARK 500 4 SER A 21 86.92 -49.99 REMARK 500 4 THR A 24 -84.83 -101.40 REMARK 500 4 CYS A 25 62.08 126.03 REMARK 500 4 PRO A 30 25.65 -69.93 REMARK 500 4 TYR A 31 -66.87 -122.29 REMARK 500 4 CYS A 35 75.84 -64.95 REMARK 500 5 SER A 14 -57.21 -165.55 REMARK 500 5 PRO A 16 71.16 -66.92 REMARK 500 5 VAL A 18 79.57 -68.26 REMARK 500 5 ALA A 20 74.21 -64.13 REMARK 500 5 SER A 21 98.79 -33.45 REMARK 500 5 THR A 24 -92.21 -117.95 REMARK 500 5 CYS A 25 64.62 131.14 REMARK 500 5 CYS A 35 71.97 -56.31 REMARK 500 6 SER A 3 -102.42 -112.27 REMARK 500 6 TYR A 5 61.82 86.40 REMARK 500 6 CYS A 8 55.59 -118.66 REMARK 500 6 TYR A 13 75.21 -111.91 REMARK 500 6 SER A 14 26.62 -74.42 REMARK 500 6 THR A 24 -90.17 -98.57 REMARK 500 6 CYS A 25 57.26 125.84 REMARK 500 REMARK 500 THIS ENTRY HAS 182 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 32 SER A 33 1 130.01 REMARK 500 GLY A 22 THR A 23 2 141.17 REMARK 500 ALA A 32 SER A 33 2 140.02 REMARK 500 GLY A 22 THR A 23 3 140.38 REMARK 500 ALA A 32 SER A 33 3 118.53 REMARK 500 SER A 33 GLN A 34 3 -145.28 REMARK 500 CYS A 35 LEU A 36 3 141.66 REMARK 500 GLY A 12 TYR A 13 4 -148.91 REMARK 500 GLY A 22 THR A 23 4 138.72 REMARK 500 ALA A 32 SER A 33 4 136.86 REMARK 500 GLY A 9 GLY A 10 5 -149.68 REMARK 500 GLY A 22 THR A 23 5 143.94 REMARK 500 ALA A 32 SER A 33 5 144.38 REMARK 500 GLY A 22 THR A 23 6 140.06 REMARK 500 ALA A 32 SER A 33 6 126.44 REMARK 500 CYS A 35 LEU A 36 6 146.49 REMARK 500 GLY A 22 THR A 23 7 140.64 REMARK 500 ALA A 32 SER A 33 7 120.32 REMARK 500 SER A 33 GLN A 34 7 -144.99 REMARK 500 GLY A 22 THR A 23 8 142.42 REMARK 500 ALA A 32 SER A 33 8 137.22 REMARK 500 GLY A 22 THR A 23 9 137.61 REMARK 500 ALA A 32 SER A 33 9 136.12 REMARK 500 SER A 33 GLN A 34 9 -147.67 REMARK 500 CYS A 35 LEU A 36 9 146.90 REMARK 500 GLY A 22 THR A 23 10 146.64 REMARK 500 ALA A 32 SER A 33 10 136.92 REMARK 500 SER A 33 GLN A 34 10 -149.71 REMARK 500 GLY A 22 THR A 23 11 142.64 REMARK 500 GLN A 26 VAL A 27 11 -148.40 REMARK 500 ALA A 32 SER A 33 11 134.52 REMARK 500 SER A 21 GLY A 22 12 -145.54 REMARK 500 GLY A 22 THR A 23 12 147.27 REMARK 500 GLY A 22 THR A 23 13 143.40 REMARK 500 ALA A 32 SER A 33 13 120.69 REMARK 500 GLY A 22 THR A 23 14 139.11 REMARK 500 ALA A 32 SER A 33 14 115.74 REMARK 500 SER A 33 GLN A 34 14 -147.76 REMARK 500 ALA A 32 SER A 33 15 117.36 REMARK 500 SER A 33 GLN A 34 15 -145.66 REMARK 500 GLY A 22 THR A 23 16 145.52 REMARK 500 ALA A 32 SER A 33 16 114.70 REMARK 500 SER A 33 GLN A 34 16 -149.63 REMARK 500 SER A 21 GLY A 22 17 -149.88 REMARK 500 ALA A 32 SER A 33 17 127.15 REMARK 500 GLY A 22 THR A 23 18 137.20 REMARK 500 ALA A 32 SER A 33 18 124.41 REMARK 500 TYR A 13 SER A 14 19 147.44 REMARK 500 GLY A 22 THR A 23 19 140.78 REMARK 500 ALA A 32 SER A 33 19 111.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 13 0.09 SIDE CHAIN REMARK 500 11 TYR A 13 0.08 SIDE CHAIN REMARK 500 15 TYR A 13 0.12 SIDE CHAIN REMARK 500 18 TYR A 31 0.07 SIDE CHAIN REMARK 500 19 TYR A 13 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1AZK A 1 36 UNP P62694 GUX1_TRIRE 478 513 SEQADV 1AZK ALA A 32 UNP P62694 TYR 509 ENGINEERED MUTATION SEQRES 1 A 36 THR GLN SER HIS TYR GLY GLN CYS GLY GLY ILE GLY TYR SEQRES 2 A 36 SER GLY PRO THR VAL CYS ALA SER GLY THR THR CYS GLN SEQRES 3 A 36 VAL LEU ASN PRO TYR ALA SER GLN CYS LEU SHEET 1 A 3 GLY A 6 GLN A 7 0 SHEET 2 A 3 SER A 33 CYS A 35 -1 N CYS A 35 O GLY A 6 SHEET 3 A 3 GLN A 26 VAL A 27 -1 O GLN A 26 N GLN A 34 SSBOND 1 CYS A 8 CYS A 25 1555 1555 2.16 SSBOND 2 CYS A 19 CYS A 35 1555 1555 2.16 CISPEP 1 GLY A 9 GLY A 10 15 -6.02 CISPEP 2 TYR A 13 SER A 14 18 6.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000