PDB Short entry for 1B0J HEADER LYASE 10-NOV-98 1B0J TITLE CRYSTAL STRUCTURE OF ACONITASE WITH ISOCITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACONITATE HYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACONITASE, CITRATE HYDRO-LYASE; COMPND 5 EC: 4.2.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: HEART; SOURCE 6 ORGANELLE: MITOCHONDRIA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC118 KEYWDS LYASE, COMPLEX, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.LLOYD,H.LAUBLE,G.S.PRASAD,C.D.STOUT REVDAT 10 09-AUG-23 1B0J 1 REMARK REVDAT 9 03-NOV-21 1B0J 1 REMARK SEQADV LINK REVDAT 8 06-FEB-19 1B0J 1 REMARK LINK ATOM REVDAT 7 04-APR-18 1B0J 1 REMARK REVDAT 6 24-FEB-09 1B0J 1 VERSN REVDAT 5 22-MAR-05 1B0J 1 JRNL REMARK REVDAT 4 01-APR-03 1B0J 1 JRNL REVDAT 3 29-DEC-99 1B0J 1 SPRSDE REVDAT 2 22-DEC-99 1B0J 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 18-NOV-98 1B0J 0 SPRSDE 18-NOV-98 1B0J 1AR3 JRNL AUTH S.J.LLOYD,H.LAUBLE,G.S.PRASAD,C.D.STOUT JRNL TITL THE MECHANISM OF ACONITASE: 1.8 A RESOLUTION CRYSTAL JRNL TITL 2 STRUCTURE OF THE S642A:CITRATE COMPLEX JRNL REF PROTEIN SCI. V. 8 2655 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10631981 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 29095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.450 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.530 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-98. REMARK 100 THE DEPOSITION ID IS D_1000000054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29472 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1FGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: B 1 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 X+1/2,Y,Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.70000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.95000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 46 NE2 HIS A 46 CD2 -0.072 REMARK 500 HIS A 98 NE2 HIS A 98 CD2 -0.069 REMARK 500 HIS A 101 NE2 HIS A 101 CD2 -0.070 REMARK 500 HIS A 167 NE2 HIS A 167 CD2 -0.079 REMARK 500 HIS A 241 NE2 HIS A 241 CD2 -0.073 REMARK 500 HIS A 298 NE2 HIS A 298 CD2 -0.067 REMARK 500 HIS A 332 NE2 HIS A 332 CD2 -0.078 REMARK 500 HIS A 379 NE2 HIS A 379 CD2 -0.067 REMARK 500 HIS A 519 NE2 HIS A 519 CD2 -0.075 REMARK 500 HIS A 569 NE2 HIS A 569 CD2 -0.071 REMARK 500 HIS A 626 NE2 HIS A 626 CD2 -0.072 REMARK 500 HIS A 646 NE2 HIS A 646 CD2 -0.072 REMARK 500 HIS A 653 NE2 HIS A 653 CD2 -0.073 REMARK 500 HIS A 717 NE2 HIS A 717 CD2 -0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 15 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR A 124 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 124 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TRP A 139 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 139 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 TYR A 154 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 TRP A 195 CD1 - CG - CD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 TRP A 195 CG - CD1 - NE1 ANGL. DEV. = -6.9 DEGREES REMARK 500 TRP A 195 CE2 - CD2 - CG ANGL. DEV. = -6.6 DEGREES REMARK 500 TRP A 214 CD1 - CG - CD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP A 214 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TYR A 240 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 HIS A 274 CB - CG - CD2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG A 275 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PRO A 325 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 PRO A 325 CA - C - O ANGL. DEV. = -15.7 DEGREES REMARK 500 PRO A 325 CA - C - N ANGL. DEV. = 23.0 DEGREES REMARK 500 TRP A 346 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP A 346 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 CYS A 358 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 402 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 410 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 410 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP A 428 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 428 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 430 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 430 NE - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 447 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 452 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLU A 498 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 LYS A 522 CA - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 LYS A 522 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 TRP A 547 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP A 547 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A 547 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 547 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 576 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 580 NE - CZ - NH1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 580 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 630 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 630 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 657 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 666 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TRP A 738 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 68.60 -105.29 REMARK 500 GLN A 106 -63.77 -157.35 REMARK 500 PRO A 157 121.01 -30.55 REMARK 500 ASP A 165 131.28 -175.93 REMARK 500 PRO A 169 -18.35 -45.70 REMARK 500 THR A 229 164.94 67.89 REMARK 500 THR A 267 -178.96 -172.97 REMARK 500 LYS A 296 -34.59 -27.04 REMARK 500 SER A 357 164.36 69.44 REMARK 500 ASN A 360 60.06 -153.55 REMARK 500 GLN A 427 68.53 -100.27 REMARK 500 ASP A 429 77.74 -109.26 REMARK 500 SER A 444 32.12 -97.71 REMARK 500 TYR A 445 -151.49 -86.27 REMARK 500 ASN A 446 -54.30 -127.30 REMARK 500 ASN A 448 31.33 -146.76 REMARK 500 ASP A 454 19.97 -147.35 REMARK 500 PHE A 480 118.71 -162.30 REMARK 500 ALA A 502 146.91 -176.09 REMARK 500 LYS A 522 60.52 -118.15 REMARK 500 ASP A 523 -136.45 -162.16 REMARK 500 SER A 524 -89.97 -1.75 REMARK 500 SER A 525 15.15 46.75 REMARK 500 ALA A 573 -125.03 -102.54 REMARK 500 SER A 587 -8.52 -52.70 REMARK 500 LEU A 591 19.97 53.56 REMARK 500 ASP A 635 -132.54 -89.36 REMARK 500 ARG A 644 110.30 -37.68 REMARK 500 PRO A 685 -14.84 -49.57 REMARK 500 PRO A 693 -15.51 -49.15 REMARK 500 SER A 743 157.50 177.71 REMARK 500 GLN A 753 34.57 23.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 666 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 969 DISTANCE = 7.85 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 12.78 ANGSTROMS REMARK 525 HOH A 986 DISTANCE = 10.23 ANGSTROMS REMARK 525 HOH A 998 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1043 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1050 DISTANCE = 6.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 358 SG REMARK 620 2 SF4 A 755 S2 104.0 REMARK 620 3 SF4 A 755 S3 118.0 103.7 REMARK 620 4 SF4 A 755 S4 122.3 97.4 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 421 SG REMARK 620 2 SF4 A 755 S1 112.1 REMARK 620 3 SF4 A 755 S2 120.9 101.4 REMARK 620 4 SF4 A 755 S4 119.7 104.5 95.2 REMARK 620 5 ICT A 756 O1 131.2 31.9 69.6 104.9 REMARK 620 6 ICT A 756 O7 110.3 52.7 56.8 130.0 30.6 REMARK 620 7 HOH A 757 O 140.5 63.7 38.2 98.3 31.9 33.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 421 SG REMARK 620 2 SF4 A 755 S1 52.5 REMARK 620 3 SF4 A 755 S3 124.5 103.6 REMARK 620 4 SF4 A 755 S4 55.3 107.3 108.6 REMARK 620 5 CYS A 424 SG 127.2 120.9 108.1 107.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 424 SG REMARK 620 2 SF4 A 755 S1 54.9 REMARK 620 3 SF4 A 755 S2 108.8 101.8 REMARK 620 4 SF4 A 755 S3 49.0 103.9 102.7 REMARK 620 5 ICT A 756 O1 93.1 86.1 157.5 95.7 REMARK 620 6 HOH A 757 O 135.1 160.8 90.1 87.9 77.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 755 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ICT A 756 DBREF 1B0J A 2 754 UNP P16276 ACON_PIG 29 781 SEQADV 1B0J ALA A 642 UNP P16276 SER 669 ENGINEERED MUTATION SEQADV 1B0J ALA A 648 UNP P16276 ARG 674 CONFLICT SEQRES 1 A 754 GLN ARG ALA LYS VAL ALA MET SER HIS PHE GLU PRO HIS SEQRES 2 A 754 GLU TYR ILE ARG TYR ASP LEU LEU GLU LYS ASN ILE ASP SEQRES 3 A 754 ILE VAL ARG LYS ARG LEU ASN ARG PRO LEU THR LEU SER SEQRES 4 A 754 GLU LYS ILE VAL TYR GLY HIS LEU ASP ASP PRO ALA ASN SEQRES 5 A 754 GLN GLU ILE GLU ARG GLY LYS THR TYR LEU ARG LEU ARG SEQRES 6 A 754 PRO ASP ARG VAL ALA MET GLN ASP ALA THR ALA GLN MET SEQRES 7 A 754 ALA MET LEU GLN PHE ILE SER SER GLY LEU PRO LYS VAL SEQRES 8 A 754 ALA VAL PRO SER THR ILE HIS CYS ASP HIS LEU ILE GLU SEQRES 9 A 754 ALA GLN LEU GLY GLY GLU LYS ASP LEU ARG ARG ALA LYS SEQRES 10 A 754 ASP ILE ASN GLN GLU VAL TYR ASN PHE LEU ALA THR ALA SEQRES 11 A 754 GLY ALA LYS TYR GLY VAL GLY PHE TRP ARG PRO GLY SER SEQRES 12 A 754 GLY ILE ILE HIS GLN ILE ILE LEU GLU ASN TYR ALA TYR SEQRES 13 A 754 PRO GLY VAL LEU LEU ILE GLY THR ASP SER HIS THR PRO SEQRES 14 A 754 ASN GLY GLY GLY LEU GLY GLY ILE CYS ILE GLY VAL GLY SEQRES 15 A 754 GLY ALA ASP ALA VAL ASP VAL MET ALA GLY ILE PRO TRP SEQRES 16 A 754 GLU LEU LYS CYS PRO LYS VAL ILE GLY VAL LYS LEU THR SEQRES 17 A 754 GLY SER LEU SER GLY TRP THR SER PRO LYS ASP VAL ILE SEQRES 18 A 754 LEU LYS VAL ALA GLY ILE LEU THR VAL LYS GLY GLY THR SEQRES 19 A 754 GLY ALA ILE VAL GLU TYR HIS GLY PRO GLY VAL ASP SER SEQRES 20 A 754 ILE SER CYS THR GLY MET ALA THR ILE CYS ASN MET GLY SEQRES 21 A 754 ALA GLU ILE GLY ALA THR THR SER VAL PHE PRO TYR ASN SEQRES 22 A 754 HIS ARG MET LYS LYS TYR LEU SER LYS THR GLY ARG ALA SEQRES 23 A 754 ASP ILE ALA ASN LEU ALA ASP GLU PHE LYS ASP HIS LEU SEQRES 24 A 754 VAL PRO ASP PRO GLY CYS HIS TYR ASP GLN VAL ILE GLU SEQRES 25 A 754 ILE ASN LEU SER GLU LEU LYS PRO HIS ILE ASN GLY PRO SEQRES 26 A 754 PHE THR PRO ASP LEU ALA HIS PRO VAL ALA GLU VAL GLY SEQRES 27 A 754 SER VAL ALA GLU LYS GLU GLY TRP PRO LEU ASP ILE ARG SEQRES 28 A 754 VAL GLY LEU ILE GLY SER CYS THR ASN SER SER TYR GLU SEQRES 29 A 754 ASP MET GLY ARG SER ALA ALA VAL ALA LYS GLN ALA LEU SEQRES 30 A 754 ALA HIS GLY LEU LYS CYS LYS SER GLN PHE THR ILE THR SEQRES 31 A 754 PRO GLY SER GLU GLN ILE ARG ALA THR ILE GLU ARG ASP SEQRES 32 A 754 GLY TYR ALA GLN VAL LEU ARG ASP VAL GLY GLY ILE VAL SEQRES 33 A 754 LEU ALA ASN ALA CYS GLY PRO CYS ILE GLY GLN TRP ASP SEQRES 34 A 754 ARG LYS ASP ILE LYS LYS GLY GLU LYS ASN THR ILE VAL SEQRES 35 A 754 THR SER TYR ASN ARG ASN PHE THR GLY ARG ASN ASP ALA SEQRES 36 A 754 ASN PRO GLU THR HIS ALA PHE VAL THR SER PRO GLU ILE SEQRES 37 A 754 VAL THR ALA LEU ALA ILE ALA GLY THR LEU LYS PHE ASN SEQRES 38 A 754 PRO GLU THR ASP PHE LEU THR GLY LYS ASP GLY LYS LYS SEQRES 39 A 754 PHE LYS LEU GLU ALA PRO ASP ALA ASP GLU LEU PRO ARG SEQRES 40 A 754 ALA GLU PHE ASP PRO GLY GLN ASP THR TYR GLN HIS PRO SEQRES 41 A 754 PRO LYS ASP SER SER GLY GLN ARG VAL ASP VAL SER PRO SEQRES 42 A 754 THR SER GLN ARG LEU GLN LEU LEU GLU PRO PHE ASP LYS SEQRES 43 A 754 TRP ASP GLY LYS ASP LEU GLU ASP LEU GLN ILE LEU ILE SEQRES 44 A 754 LYS VAL LYS GLY LYS CYS THR THR ASP HIS ILE SER ALA SEQRES 45 A 754 ALA GLY PRO TRP LEU LYS PHE ARG GLY HIS LEU ASP ASN SEQRES 46 A 754 ILE SER ASN ASN LEU LEU ILE GLY ALA ILE ASN ILE GLU SEQRES 47 A 754 ASN ARG LYS ALA ASN SER VAL ARG ASN ALA VAL THR GLN SEQRES 48 A 754 GLU PHE GLY PRO VAL PRO ASP THR ALA ARG TYR TYR LYS SEQRES 49 A 754 GLN HIS GLY ILE ARG TRP VAL VAL ILE GLY ASP GLU ASN SEQRES 50 A 754 TYR GLY GLU GLY ALA SER ARG GLU HIS SER ALA LEU GLU SEQRES 51 A 754 PRO ARG HIS LEU GLY GLY ARG ALA ILE ILE THR LYS SER SEQRES 52 A 754 PHE ALA ARG ILE HIS GLU THR ASN LEU LYS LYS GLN GLY SEQRES 53 A 754 LEU LEU PRO LEU THR PHE ALA ASP PRO ALA ASP TYR ASN SEQRES 54 A 754 LYS ILE HIS PRO VAL ASP LYS LEU THR ILE GLN GLY LEU SEQRES 55 A 754 LYS ASP PHE ALA PRO GLY LYS PRO LEU LYS CYS ILE ILE SEQRES 56 A 754 LYS HIS PRO ASN GLY THR GLN GLU THR ILE LEU LEU ASN SEQRES 57 A 754 HIS THR PHE ASN GLU THR GLN ILE GLU TRP PHE ARG ALA SEQRES 58 A 754 GLY SER ALA LEU ASN ARG MET LYS GLU LEU GLN GLN LYS HET SF4 A 755 8 HET ICT A 756 13 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM ICT ISOCITRIC ACID FORMUL 2 SF4 FE4 S4 FORMUL 3 ICT C6 H8 O7 FORMUL 4 HOH *318(H2 O) HELIX 1 1 ARG A 17 ASN A 33 1 17 HELIX 2 2 THR A 37 HIS A 46 1 10 HELIX 3 3 ASP A 73 GLY A 87 1 15 HELIX 4 4 GLY A 108 ASN A 120 1 13 HELIX 5 5 ASN A 120 GLY A 135 1 16 HELIX 6 6 ILE A 145 TYR A 154 1 10 HELIX 7 7 HIS A 167 GLY A 175 5 9 HELIX 8 8 GLY A 182 ALA A 191 1 10 HELIX 9 9 SER A 216 THR A 229 1 14 HELIX 10 10 GLY A 242 ILE A 248 5 7 HELIX 11 11 SER A 249 MET A 259 1 11 HELIX 12 12 GLY A 260 GLY A 264 5 5 HELIX 13 13 ASN A 273 THR A 283 1 11 HELIX 14 14 ARG A 285 LYS A 296 1 12 HELIX 15 15 ASP A 297 LEU A 299 5 3 HELIX 16 16 VAL A 334 GLY A 345 1 12 HELIX 17 17 SER A 362 ALA A 378 1 17 HELIX 18 18 SER A 393 ASP A 403 1 11 HELIX 19 19 GLY A 404 VAL A 412 1 9 HELIX 20 20 CYS A 421 GLY A 426 5 6 HELIX 21 21 SER A 465 GLY A 476 1 12 HELIX 22 22 THR A 566 SER A 571 1 6 HELIX 23 23 ALA A 573 ARG A 580 5 8 HELIX 24 24 HIS A 582 SER A 587 1 6 HELIX 25 25 ASN A 588 LEU A 590 5 3 HELIX 26 26 PRO A 615 HIS A 626 1 12 HELIX 27 27 GLU A 645 LEU A 654 1 10 HELIX 28 28 ALA A 665 GLN A 675 1 11 HELIX 29 29 ASP A 684 ILE A 691 5 8 HELIX 30 30 ASN A 732 GLY A 742 1 11 HELIX 31 31 SER A 743 GLN A 752 1 10 SHEET 1 A 2 ALA A 6 SER A 8 0 SHEET 2 A 2 GLU A 11 TYR A 15 -1 O GLU A 11 N SER A 8 SHEET 1 B 2 TYR A 61 LEU A 64 0 SHEET 2 B 2 TRP A 195 LYS A 198 -1 O TRP A 195 N LEU A 64 SHEET 1 C 6 ILE A 177 GLY A 180 0 SHEET 2 C 6 LEU A 160 GLY A 163 1 O LEU A 161 N ILE A 179 SHEET 3 C 6 ARG A 68 GLN A 72 1 O ARG A 68 N ILE A 162 SHEET 4 C 6 SER A 95 HIS A 98 1 O THR A 96 N MET A 71 SHEET 5 C 6 GLY A 137 TRP A 139 1 O GLY A 137 N ILE A 97 SHEET 6 C 6 TYR A 517 GLN A 518 -1 N GLN A 518 O PHE A 138 SHEET 1 D 4 THR A 267 VAL A 269 0 SHEET 2 D 4 ALA A 236 HIS A 241 1 O ALA A 236 N THR A 267 SHEET 3 D 4 LYS A 201 THR A 208 1 O LYS A 201 N ILE A 237 SHEET 4 D 4 GLN A 309 ASN A 314 1 O GLN A 309 N GLY A 204 SHEET 1 E 2 HIS A 321 ASN A 323 0 SHEET 2 E 2 ALA A 331 PRO A 333 -1 O HIS A 332 N ILE A 322 SHEET 1 F 5 GLY A 414 VAL A 416 0 SHEET 2 F 5 GLN A 386 ILE A 389 1 O PHE A 387 N ILE A 415 SHEET 3 F 5 ILE A 350 ILE A 355 1 O ARG A 351 N GLN A 386 SHEET 4 F 5 ASN A 439 THR A 443 1 O THR A 440 N ARG A 351 SHEET 5 F 5 THR A 459 VAL A 463 1 N HIS A 460 O ASN A 439 SHEET 1 G 2 PHE A 486 THR A 488 0 SHEET 2 G 2 LYS A 494 LYS A 496 -1 N PHE A 495 O LEU A 487 SHEET 1 H 8 LEU A 552 LYS A 560 0 SHEET 2 H 8 TRP A 630 GLY A 634 1 O VAL A 631 N LEU A 558 SHEET 3 H 8 GLY A 656 THR A 661 1 N ARG A 657 O TRP A 630 SHEET 4 H 8 LEU A 678 PHE A 682 1 O LEU A 678 N ILE A 659 SHEET 5 H 8 GLN A 722 ASN A 728 -1 O ASN A 728 N THR A 681 SHEET 6 H 8 LEU A 711 LYS A 716 -1 O LEU A 711 N LEU A 727 SHEET 7 H 8 LYS A 696 GLN A 700 -1 O LYS A 696 N LYS A 716 SHEET 8 H 8 LEU A 552 LYS A 560 -1 N LEU A 552 O ILE A 699 SHEET 1 I 2 ILE A 595 ASN A 596 0 SHEET 2 I 2 LYS A 601 ALA A 602 -1 O LYS A 601 N ASN A 596 SHEET 1 J 2 VAL A 605 ARG A 606 0 SHEET 2 J 2 PHE A 613 GLY A 614 -1 N GLY A 614 O VAL A 605 LINK SG CYS A 358 FE1 SF4 A 755 1555 1555 2.33 LINK SG CYS A 421 FE3 SF4 A 755 1555 1555 2.24 LINK SG CYS A 421 FE2 SF4 A 755 1555 1555 4.73 LINK SG CYS A 424 FE2 SF4 A 755 1555 1555 2.32 LINK SG CYS A 424 FE4 SF4 A 755 1555 1555 4.87 LINK FE4 SF4 A 755 O1 ICT A 756 1555 1555 2.29 LINK FE3 SF4 A 755 O1 ICT A 756 1555 1555 4.88 LINK FE3 SF4 A 755 O7 ICT A 756 1555 1555 4.60 LINK FE4 SF4 A 755 O HOH A 757 1555 1555 1.85 LINK FE3 SF4 A 755 O HOH A 757 1555 1555 4.58 CISPEP 1 GLY A 324 PRO A 325 0 21.36 SITE 1 AC1 9 HIS A 167 SER A 357 CYS A 358 CYS A 421 SITE 2 AC1 9 CYS A 424 ILE A 425 ASN A 446 ICT A 756 SITE 3 AC1 9 HOH A 757 SITE 1 AC2 12 GLN A 72 HIS A 101 ASP A 165 SER A 166 SITE 2 AC2 12 ARG A 447 ARG A 452 ARG A 580 ALA A 642 SITE 3 AC2 12 SER A 643 ARG A 644 SF4 A 755 HOH A 757 CRYST1 187.400 72.100 73.900 90.00 90.00 77.70 B 1 1 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005336 -0.001163 0.000000 0.00000 SCALE2 0.000000 0.014195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013532 0.00000