PDB Short entry for 1B0K HEADER LYASE 11-NOV-98 1B0K TITLE S642A:FLUOROCITRATE COMPLEX OF ACONITASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ACONITASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CITRATE HYDRO-LYASE; COMPND 5 EC: 4.2.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 STRAIN: BL21 DE3; SOURCE 6 ORGAN: HEART; SOURCE 7 ORGANELLE: MITOCHONDRIA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PUC118 KEYWDS TRICARBOXYLIC ACID CYCLE, IRON-SULFUR, MITOCHONDRION, TRANSIT KEYWDS 2 PEPTIDE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.LLOYD,H.LAUBLE,G.S.PRASAD,C.D.STOUT REVDAT 13 09-AUG-23 1B0K 1 REMARK REVDAT 12 03-NOV-21 1B0K 1 REMARK SEQADV LINK REVDAT 11 04-APR-18 1B0K 1 REMARK REVDAT 10 04-OCT-17 1B0K 1 REMARK REVDAT 9 09-JUN-09 1B0K 1 REVDAT REVDAT 8 24-MAR-09 1B0K 1 SPRSDE LINK ATOM CONECT REVDAT 7 03-MAR-09 1B0K 1 SPRSDE REVDAT 6 24-FEB-09 1B0K 1 VERSN REVDAT 5 15-MAR-05 1B0K 1 JRNL REVDAT 4 01-APR-03 1B0K 1 JRNL REVDAT 3 09-JUN-00 1B0K 1 DBREF SEQADV REVDAT 2 22-DEC-99 1B0K 1 HEADER COMPND REMARK JRNL REVDAT 2 2 1 ATOM SOURCE SEQRES REVDAT 1 18-NOV-99 1B0K 0 SPRSDE 18-NOV-99 1B0K 1AS9 JRNL AUTH S.J.LLOYD,H.LAUBLE,G.S.PRASAD,C.D.STOUT JRNL TITL THE MECHANISM OF ACONITASE: 1.8 A RESOLUTION CRYSTAL JRNL TITL 2 STRUCTURE OF THE S642A:CITRATE COMPLEX. JRNL REF PROTEIN SCI. V. 8 2655 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10631981 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 30585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5814 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.330 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION REMARK 4 REMARK 4 1B0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000008107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: PDB ENTRY 1FGH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: B 1 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 X+1/2,Y,Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.05000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 46 NE2 HIS A 46 CD2 -0.071 REMARK 500 HIS A 98 NE2 HIS A 98 CD2 -0.070 REMARK 500 HIS A 101 NE2 HIS A 101 CD2 -0.073 REMARK 500 HIS A 167 NE2 HIS A 167 CD2 -0.073 REMARK 500 HIS A 241 NE2 HIS A 241 CD2 -0.075 REMARK 500 HIS A 298 NE2 HIS A 298 CD2 -0.068 REMARK 500 HIS A 332 NE2 HIS A 332 CD2 -0.076 REMARK 500 HIS A 379 NE2 HIS A 379 CD2 -0.068 REMARK 500 CYS A 421 CA CYS A 421 CB -0.097 REMARK 500 HIS A 460 NE2 HIS A 460 CD2 -0.071 REMARK 500 HIS A 519 NE2 HIS A 519 CD2 -0.070 REMARK 500 HIS A 569 NE2 HIS A 569 CD2 -0.066 REMARK 500 HIS A 582 NE2 HIS A 582 CD2 -0.071 REMARK 500 HIS A 626 NE2 HIS A 626 CD2 -0.072 REMARK 500 GLY A 641 C ALA A 642 N -0.170 REMARK 500 SER A 643 N SER A 643 CA -0.137 REMARK 500 HIS A 646 NE2 HIS A 646 CD2 -0.077 REMARK 500 HIS A 717 NE2 HIS A 717 CD2 -0.078 REMARK 500 HIS A 729 NE2 HIS A 729 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ASP A 100 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 100 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 HIS A 101 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TRP A 139 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 139 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 165 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 195 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP A 195 CG - CD1 - NE1 ANGL. DEV. = -6.6 DEGREES REMARK 500 TRP A 195 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP A 214 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP A 214 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 279 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 PRO A 325 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 PRO A 325 CA - C - N ANGL. DEV. = 18.5 DEGREES REMARK 500 TRP A 346 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 346 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 397 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 402 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 TYR A 405 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 410 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 410 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TRP A 428 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP A 428 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 430 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 VAL A 442 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 452 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TYR A 517 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LYS A 522 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 528 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 TRP A 547 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 547 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 576 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP A 576 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 580 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 580 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 HIS A 582 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 TRP A 630 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 630 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ALA A 642 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 666 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 666 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP A 738 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP A 738 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 740 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 106 -54.98 -148.61 REMARK 500 ASP A 165 137.96 -178.29 REMARK 500 THR A 229 167.54 66.97 REMARK 500 THR A 267 -171.54 -178.77 REMARK 500 LYS A 296 -39.91 -29.86 REMARK 500 SER A 357 164.42 61.29 REMARK 500 ASN A 360 58.03 -152.11 REMARK 500 ILE A 425 40.69 -100.69 REMARK 500 TYR A 445 -145.92 -90.22 REMARK 500 ASN A 448 34.78 -146.86 REMARK 500 ASP A 454 20.26 -143.38 REMARK 500 ALA A 455 16.01 53.22 REMARK 500 THR A 464 -159.78 -149.85 REMARK 500 ASP A 523 -95.04 -143.37 REMARK 500 SER A 524 -93.42 -36.44 REMARK 500 SER A 525 -0.86 56.01 REMARK 500 LEU A 552 70.55 -106.62 REMARK 500 ALA A 573 -128.51 -106.29 REMARK 500 ASP A 635 -130.13 -92.76 REMARK 500 ARG A 644 106.51 -38.20 REMARK 500 ASP A 687 -19.57 -49.56 REMARK 500 PRO A 693 -17.30 -46.56 REMARK 500 SER A 743 161.50 178.72 REMARK 500 GLN A 753 44.26 20.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 363 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 358 SG REMARK 620 2 SF4 A 755 S2 109.3 REMARK 620 3 SF4 A 755 S3 117.8 95.6 REMARK 620 4 SF4 A 755 S4 117.3 101.9 111.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 421 SG REMARK 620 2 SF4 A 755 S1 106.2 REMARK 620 3 SF4 A 755 S2 133.4 95.4 REMARK 620 4 SF4 A 755 S4 110.8 107.2 100.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 424 SG REMARK 620 2 SF4 A 755 S1 115.1 REMARK 620 3 SF4 A 755 S3 114.3 99.7 REMARK 620 4 SF4 A 755 S4 111.0 106.8 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 755 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FLC A 756 OB1 REMARK 620 2 SF4 A 755 S1 90.5 REMARK 620 3 SF4 A 755 S2 167.7 95.5 REMARK 620 4 SF4 A 755 S3 95.8 100.3 93.6 REMARK 620 5 FLC A 756 OHB 72.4 88.7 97.0 165.4 REMARK 620 6 O A1100 O 93.7 170.6 78.8 87.7 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 756 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O A 1100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 755 DBREF 1B0K A 2 754 UNP P16276 ACON_PIG 29 781 SEQADV 1B0K ALA A 642 UNP P16276 SER 669 ENGINEERED MUTATION SEQADV 1B0K SER A 647 UNP P16276 ARG 674 CONFLICT SEQRES 1 A 753 ARG ALA LYS VAL ALA MET SER HIS PHE GLU PRO HIS GLU SEQRES 2 A 753 TYR ILE ARG TYR ASP LEU LEU GLU LYS ASN ILE ASP ILE SEQRES 3 A 753 VAL ARG LYS ARG LEU ASN ARG PRO LEU THR LEU SER GLU SEQRES 4 A 753 LYS ILE VAL TYR GLY HIS LEU ASP ASP PRO ALA ASN GLN SEQRES 5 A 753 GLU ILE GLU ARG GLY LYS THR TYR LEU ARG LEU ARG PRO SEQRES 6 A 753 ASP ARG VAL ALA MET GLN ASP ALA THR ALA GLN MET ALA SEQRES 7 A 753 MET LEU GLN PHE ILE SER SER GLY LEU PRO LYS VAL ALA SEQRES 8 A 753 VAL PRO SER THR ILE HIS CYS ASP HIS LEU ILE GLU ALA SEQRES 9 A 753 GLN LEU GLY GLY GLU LYS ASP LEU ARG ARG ALA LYS ASP SEQRES 10 A 753 ILE ASN GLN GLU VAL TYR ASN PHE LEU ALA THR ALA GLY SEQRES 11 A 753 ALA LYS TYR GLY VAL GLY PHE TRP ARG PRO GLY SER GLY SEQRES 12 A 753 ILE ILE HIS GLN ILE ILE LEU GLU ASN TYR ALA TYR PRO SEQRES 13 A 753 GLY VAL LEU LEU ILE GLY THR ASP SER HIS THR PRO ASN SEQRES 14 A 753 GLY GLY GLY LEU GLY GLY ILE CYS ILE GLY VAL GLY GLY SEQRES 15 A 753 ALA ASP ALA VAL ASP VAL MET ALA GLY ILE PRO TRP GLU SEQRES 16 A 753 LEU LYS CYS PRO LYS VAL ILE GLY VAL LYS LEU THR GLY SEQRES 17 A 753 SER LEU SER GLY TRP THR SER PRO LYS ASP VAL ILE LEU SEQRES 18 A 753 LYS VAL ALA GLY ILE LEU THR VAL LYS GLY GLY THR GLY SEQRES 19 A 753 ALA ILE VAL GLU TYR HIS GLY PRO GLY VAL ASP SER ILE SEQRES 20 A 753 SER CYS THR GLY MET ALA THR ILE CYS ASN MET GLY ALA SEQRES 21 A 753 GLU ILE GLY ALA THR THR SER VAL PHE PRO TYR ASN HIS SEQRES 22 A 753 ARG MET LYS LYS TYR LEU SER LYS THR GLY ARG ALA ASP SEQRES 23 A 753 ILE ALA ASN LEU ALA ASP GLU PHE LYS ASP HIS LEU VAL SEQRES 24 A 753 PRO ASP PRO GLY CYS HIS TYR ASP GLN VAL ILE GLU ILE SEQRES 25 A 753 ASN LEU SER GLU LEU LYS PRO HIS ILE ASN GLY PRO PHE SEQRES 26 A 753 THR PRO ASP LEU ALA HIS PRO VAL ALA GLU VAL GLY SER SEQRES 27 A 753 VAL ALA GLU LYS GLU GLY TRP PRO LEU ASP ILE ARG VAL SEQRES 28 A 753 GLY LEU ILE GLY SER CYS THR ASN SER SER TYR GLU ASP SEQRES 29 A 753 MET GLY ARG SER ALA ALA VAL ALA LYS GLN ALA LEU ALA SEQRES 30 A 753 HIS GLY LEU LYS CYS LYS SER GLN PHE THR ILE THR PRO SEQRES 31 A 753 GLY SER GLU GLN ILE ARG ALA THR ILE GLU ARG ASP GLY SEQRES 32 A 753 TYR ALA GLN VAL LEU ARG ASP VAL GLY GLY ILE VAL LEU SEQRES 33 A 753 ALA ASN ALA CYS GLY PRO CYS ILE GLY GLN TRP ASP ARG SEQRES 34 A 753 LYS ASP ILE LYS LYS GLY GLU LYS ASN THR ILE VAL THR SEQRES 35 A 753 SER TYR ASN ARG ASN PHE THR GLY ARG ASN ASP ALA ASN SEQRES 36 A 753 PRO GLU THR HIS ALA PHE VAL THR SER PRO GLU ILE VAL SEQRES 37 A 753 THR ALA LEU ALA ILE ALA GLY THR LEU LYS PHE ASN PRO SEQRES 38 A 753 GLU THR ASP PHE LEU THR GLY LYS ASP GLY LYS LYS PHE SEQRES 39 A 753 LYS LEU GLU ALA PRO ASP ALA ASP GLU LEU PRO ARG ALA SEQRES 40 A 753 GLU PHE ASP PRO GLY GLN ASP THR TYR GLN HIS PRO PRO SEQRES 41 A 753 LYS ASP SER SER GLY GLN ARG VAL ASP VAL SER PRO THR SEQRES 42 A 753 SER GLN ARG LEU GLN LEU LEU GLU PRO PHE ASP LYS TRP SEQRES 43 A 753 ASP GLY LYS ASP LEU GLU ASP LEU GLN ILE LEU ILE LYS SEQRES 44 A 753 VAL LYS GLY LYS CYS THR THR ASP HIS ILE SER ALA ALA SEQRES 45 A 753 GLY PRO TRP LEU LYS PHE ARG GLY HIS LEU ASP ASN ILE SEQRES 46 A 753 SER ASN ASN LEU LEU ILE GLY ALA ILE ASN ILE GLU ASN SEQRES 47 A 753 ARG LYS ALA ASN SER VAL ARG ASN ALA VAL THR GLN GLU SEQRES 48 A 753 PHE GLY PRO VAL PRO ASP THR ALA ARG TYR TYR LYS GLN SEQRES 49 A 753 HIS GLY ILE ARG TRP VAL VAL ILE GLY ASP GLU ASN TYR SEQRES 50 A 753 GLY GLU GLY ALA SER ARG GLU HIS SER ALA LEU GLU PRO SEQRES 51 A 753 ARG HIS LEU GLY GLY ARG ALA ILE ILE THR LYS SER PHE SEQRES 52 A 753 ALA ARG ILE HIS GLU THR ASN LEU LYS LYS GLN GLY LEU SEQRES 53 A 753 LEU PRO LEU THR PHE ALA ASP PRO ALA ASP TYR ASN LYS SEQRES 54 A 753 ILE HIS PRO VAL ASP LYS LEU THR ILE GLN GLY LEU LYS SEQRES 55 A 753 ASP PHE ALA PRO GLY LYS PRO LEU LYS CYS ILE ILE LYS SEQRES 56 A 753 HIS PRO ASN GLY THR GLN GLU THR ILE LEU LEU ASN HIS SEQRES 57 A 753 THR PHE ASN GLU THR GLN ILE GLU TRP PHE ARG ALA GLY SEQRES 58 A 753 SER ALA LEU ASN ARG MET LYS GLU LEU GLN GLN LYS HET FLC A 756 13 HET SF4 A 755 8 HET O A1100 1 HETNAM FLC CITRATE ANION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM O OXYGEN ATOM FORMUL 2 FLC C6 H5 O7 3- FORMUL 3 SF4 FE4 S4 FORMUL 4 O O FORMUL 5 HOH *303(H2 O) HELIX 1 1 TYR A 18 LEU A 32 1 15 HELIX 2 2 LEU A 38 HIS A 46 1 9 HELIX 3 3 ASP A 73 SER A 86 1 14 HELIX 4 4 GLY A 109 ILE A 119 1 11 HELIX 5 5 GLN A 121 TYR A 134 1 14 HELIX 6 6 ILE A 146 ASN A 153 1 8 HELIX 7 7 SER A 166 LEU A 174 5 9 HELIX 8 8 GLY A 183 MET A 190 1 8 HELIX 9 9 PRO A 217 LEU A 228 1 12 HELIX 10 10 PRO A 243 SER A 247 5 5 HELIX 11 11 CYS A 250 ILE A 263 1 14 HELIX 12 12 HIS A 274 THR A 283 1 10 HELIX 13 13 ALA A 286 ASP A 293 1 8 HELIX 14 14 LYS A 296 HIS A 298 5 3 HELIX 15 15 VAL A 337 GLU A 344 1 8 HELIX 16 16 TYR A 363 HIS A 379 1 17 HELIX 17 17 GLU A 394 ARG A 402 1 9 HELIX 18 18 TYR A 405 ASP A 411 1 7 HELIX 19 19 GLY A 422 ILE A 425 5 4 HELIX 20 20 PRO A 466 ALA A 475 1 10 HELIX 21 21 THR A 567 ILE A 570 1 4 HELIX 22 22 GLY A 574 PHE A 579 5 6 HELIX 23 23 LEU A 583 ASN A 589 1 7 HELIX 24 24 VAL A 616 GLN A 625 1 10 HELIX 25 25 GLU A 645 HIS A 653 5 9 HELIX 26 26 ARG A 666 LYS A 674 1 9 HELIX 27 27 PRO A 685 LYS A 690 5 6 HELIX 28 28 GLU A 733 ALA A 741 1 9 HELIX 29 29 ALA A 744 LEU A 751 1 8 SHEET 1 A 2 TYR A 61 LEU A 64 0 SHEET 2 A 2 TRP A 195 LYS A 198 -1 N LEU A 197 O LEU A 62 SHEET 1 B 5 GLY A 137 TRP A 139 0 SHEET 2 B 5 SER A 95 HIS A 98 1 N ILE A 97 O GLY A 137 SHEET 3 B 5 ARG A 68 GLN A 72 1 N VAL A 69 O THR A 96 SHEET 4 B 5 LEU A 160 THR A 164 1 N ILE A 162 O ARG A 68 SHEET 5 B 5 ILE A 177 GLY A 180 1 N ILE A 177 O LEU A 161 SHEET 1 C 4 GLN A 309 ASN A 314 0 SHEET 2 C 4 LYS A 201 THR A 208 1 N GLY A 204 O GLN A 309 SHEET 3 C 4 ALA A 236 HIS A 241 1 N ILE A 237 O LYS A 201 SHEET 4 C 4 THR A 267 VAL A 269 1 N THR A 267 O VAL A 238 SHEET 1 D 2 HIS A 321 ASN A 323 0 SHEET 2 D 2 ALA A 331 PRO A 333 -1 N HIS A 332 O ILE A 322 SHEET 1 E 5 GLY A 414 LEU A 417 0 SHEET 2 E 5 GLN A 386 THR A 390 1 N PHE A 387 O ILE A 415 SHEET 3 E 5 ILE A 350 ILE A 355 1 N GLY A 353 O GLN A 386 SHEET 4 E 5 ASN A 439 THR A 443 1 N THR A 440 O ARG A 351 SHEET 5 E 5 THR A 459 VAL A 463 1 N HIS A 460 O ASN A 439 SHEET 1 F 4 LEU A 678 THR A 681 0 SHEET 2 F 4 GLY A 656 THR A 661 1 N ILE A 659 O LEU A 678 SHEET 3 F 4 TRP A 630 GLY A 634 1 N TRP A 630 O ARG A 657 SHEET 4 F 4 GLN A 556 LYS A 560 1 N GLN A 556 O VAL A 631 SHEET 1 G 3 LYS A 696 GLN A 700 0 SHEET 2 G 3 LEU A 711 LYS A 716 -1 N LYS A 716 O LYS A 696 SHEET 3 G 3 GLN A 722 LEU A 727 -1 N LEU A 727 O LEU A 711 LINK SG CYS A 358 FE1 SF4 A 755 1555 1555 2.28 LINK SG CYS A 421 FE3 SF4 A 755 1555 1555 2.30 LINK SG CYS A 424 FE2 SF4 A 755 1555 1555 2.33 LINK FE4 SF4 A 755 OB1 FLC A 756 1555 1555 2.12 LINK FE4 SF4 A 755 OHB FLC A 756 1555 1555 2.58 LINK FE4 SF4 A 755 O O A1100 1555 1555 2.00 CISPEP 1 GLY A 324 PRO A 325 0 20.09 SITE 1 AC1 10 GLN A 72 HIS A 101 ASP A 165 SER A 166 SITE 2 AC1 10 ARG A 447 ARG A 452 ARG A 580 ALA A 642 SITE 3 AC1 10 SER A 643 ARG A 644 SITE 1 AC2 2 ASP A 165 HIS A 167 SITE 1 AC3 7 HIS A 101 HIS A 167 CYS A 358 CYS A 421 SITE 2 AC3 7 CYS A 424 ILE A 425 ASN A 446 CRYST1 187.800 72.300 74.100 90.00 90.00 77.60 B 1 1 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005325 -0.001171 0.000000 0.00000 SCALE2 0.000000 0.014162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013495 0.00000