PDB Short entry for 1B55 HEADER TRANSFERASE 12-JAN-99 1B55 TITLE PH DOMAIN FROM BRUTON'S TYROSINE KINASE IN COMPLEX WITH INOSITOL 1,3, TITLE 2 4,5-TETRAKISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PH DOMAIN AND BTK MOTIF; COMPND 5 SYNONYM: BRUTON'S AGAMMAGLOBULINEMIA TYROSINE KINASE, BTK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 CELL: B-LYMPHOCYTE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PBAT4; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PBAT4-BTK3 KEYWDS TRANSFERASE, PH DOMAIN, BTK MOTIF, ZINC BINDING, X-LINKED KEYWDS 2 AGAMMAGLOBULINEMIA, TYROSINE-PROTEIN KINASE, INOSITOL 1, 3, 4, 5- KEYWDS 3 TETRAKISPHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR K.DJINOVIC CARUGO,E.BARALDI,M.HYVOENEN,P.LO SURDO,A.M.RILEY, AUTHOR 2 B.V.L.POTTER,R.O'BRIEN,J.E.LADBURY,M.SARASTE REVDAT 5 02-AUG-23 1B55 1 REMARK LINK REVDAT 4 16-NOV-11 1B55 1 VERSN HETATM REVDAT 3 24-FEB-09 1B55 1 VERSN REVDAT 2 01-APR-03 1B55 1 JRNL REVDAT 1 15-JUN-99 1B55 0 JRNL AUTH E.BARALDI,K.DJINOVIC CARUGO,M.HYVONEN,P.L.SURDO,A.M.RILEY, JRNL AUTH 2 B.V.POTTER,R.O'BRIEN,J.E.LADBURY,M.SARASTE JRNL TITL STRUCTURE OF THE PH DOMAIN FROM BRUTON'S TYROSINE KINASE IN JRNL TITL 2 COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE. JRNL REF STRUCTURE FOLD.DES. V. 7 449 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10196129 JRNL DOI 10.1016/S0969-2126(99)80057-4 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 25487 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.350 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2710 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 61.200 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.022 ; 4.100 ; 5606 REMARK 3 BOND ANGLES (DEGREES) : 2.824 ; 4.600 ; 7534 REMARK 3 TORSION ANGLES (DEGREES) : 21.802; 0.000 ; 3286 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.029 ; 3.200 ; 140 REMARK 3 GENERAL PLANES (A) : 0.035 ; 8.300 ; 774 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 6.162 ; 10.000; 2833 REMARK 3 NON-BONDED CONTACTS (A) : 0.173 ; 15.000; 268 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : J. MOL. BIOL. (1975), 91, 201-228 REMARK 3 KSOL : 0.75 REMARK 3 BSOL : 150.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1BTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.10250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.76400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.88200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.10250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.64600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 161.64600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.10250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.88200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.10250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.76400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.10250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.76400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.10250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 161.64600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 53.88200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.10250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.88200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 161.64600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.10250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.10250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 107.76400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 55.10250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.88200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 274 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 239 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 249 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 83 REMARK 465 GLU A 84 REMARK 465 GLU A 85 REMARK 465 SER A 86 REMARK 465 SER A 87 REMARK 465 GLU A 88 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 ARG B 82 REMARK 465 GLY B 83 REMARK 465 GLU B 84 REMARK 465 GLU B 85 REMARK 465 SER B 86 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 19 CD CE NZ REMARK 480 LYS A 27 NZ REMARK 480 ARG A 46 NE CZ NH1 NH2 REMARK 480 LYS A 60 CE NZ REMARK 480 ARG A 82 NE CZ NH1 NH2 REMARK 480 GLU A 119 CD OE1 OE2 REMARK 480 LYS A 122 CE NZ REMARK 480 GLN A 140 CG CD OE1 NE2 REMARK 480 LYS B 19 CD CE NZ REMARK 480 LYS B 27 NZ REMARK 480 LYS B 36 CD CE NZ REMARK 480 ARG B 46 NE CZ NH1 NH2 REMARK 480 GLU B 70 CG CD OE1 OE2 REMARK 480 LYS B 71 CB CG CD CE NZ REMARK 480 MET B 89 CB CG SD CE REMARK 480 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 480 GLU B 118 CD OE1 OE2 REMARK 480 ASP B 137 CG OD1 OD2 REMARK 480 LYS B 141 CG CD CE NZ REMARK 480 GLN B 151 CB CG CD OE1 NE2 REMARK 480 TYR B 152 O CB CG CD1 CD2 CE1 CE2 REMARK 480 TYR B 152 CZ OH REMARK 480 LYS B 160 NZ REMARK 480 MET B 163 CB CG SD CE REMARK 480 LEU B 168 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA SER B 115 O HOH B 179 2.01 REMARK 500 O5P 4IP A 171 O HOH A 197 2.10 REMARK 500 CD1 PHE B 10 O HOH B 179 2.13 REMARK 500 N LEU B 168 O HOH B 177 2.13 REMARK 500 O GLU B 90 N ILE B 92 2.13 REMARK 500 O GLU A 90 N ILE A 92 2.14 REMARK 500 CA PRO B 101 O HOH B 178 2.14 REMARK 500 OG1 THR B 62 O HOH B 173 2.17 REMARK 500 N CYS B 63 O HOH B 173 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 207 O HOH A 207 6555 1.28 REMARK 500 O HOH A 211 O HOH A 211 6555 1.70 REMARK 500 OH TYR A 142 O HOH A 211 6555 1.76 REMARK 500 NZ LYS A 129 O ASN A 170 6555 1.80 REMARK 500 O HOH A 288 O HOH A 288 7455 1.91 REMARK 500 OG1 THR A 66 NE2 GLN A 166 6555 2.07 REMARK 500 O HOH B 201 O HOH B 201 10555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 169 CD GLU B 169 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ILE A 167 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 MET B 89 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 VAL B 104 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP B 107 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 PRO B 144 C - N - CD ANGL. DEV. = -14.8 DEGREES REMARK 500 CYS B 145 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 CYS B 145 CA - CB - SG ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 80 -166.93 -65.46 REMARK 500 GLN A 91 -27.23 -30.24 REMARK 500 LEU A 138 95.64 -61.27 REMARK 500 VAL A 139 155.71 -48.92 REMARK 500 SER A 156 3.97 55.26 REMARK 500 LYS A 160 -36.61 -32.26 REMARK 500 ALA B 3 121.89 163.95 REMARK 500 LEU B 6 172.62 177.13 REMARK 500 GLU B 7 113.93 174.59 REMARK 500 GLN B 16 6.74 59.60 REMARK 500 LYS B 17 -46.42 -22.75 REMARK 500 SER B 21 119.74 -36.07 REMARK 500 THR B 33 -157.35 -125.76 REMARK 500 ARG B 48 171.45 178.49 REMARK 500 PRO B 69 106.57 -24.04 REMARK 500 PRO B 75 -81.89 -9.54 REMARK 500 GLU B 76 -44.95 -17.42 REMARK 500 GLN B 78 -173.61 -47.52 REMARK 500 MET B 89 59.74 -150.24 REMARK 500 GLN B 91 -40.54 -17.32 REMARK 500 ILE B 94 5.19 -69.98 REMARK 500 ILE B 95 18.94 -140.98 REMARK 500 TYR B 100 71.92 -101.42 REMARK 500 GLU B 118 -73.16 -50.83 REMARK 500 GLU B 119 -39.75 -34.68 REMARK 500 TRP B 124 -72.21 -72.86 REMARK 500 ILE B 125 -77.70 -27.56 REMARK 500 HIS B 126 -72.96 -28.74 REMARK 500 ASN B 130 -37.50 -29.51 REMARK 500 ARG B 133 -51.27 -7.24 REMARK 500 ASP B 137 41.10 -148.91 REMARK 500 LEU B 138 84.62 -65.45 REMARK 500 VAL B 139 164.78 -48.39 REMARK 500 HIS B 143 74.11 -112.70 REMARK 500 PRO B 144 -23.14 -32.58 REMARK 500 TYR B 152 95.71 -46.03 REMARK 500 LEU B 153 37.67 -68.58 REMARK 500 CYS B 154 -61.40 -90.98 REMARK 500 SER B 156 -15.46 -40.93 REMARK 500 GLN B 157 163.44 -39.23 REMARK 500 ASN B 161 14.22 -68.68 REMARK 500 CYS B 165 65.82 -68.50 REMARK 500 GLN B 166 167.74 160.49 REMARK 500 GLU B 169 -71.39 -89.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 44 0.07 SIDE CHAIN REMARK 500 ASN A 135 0.09 SIDE CHAIN REMARK 500 ASP B 57 0.07 SIDE CHAIN REMARK 500 ASN B 72 0.08 SIDE CHAIN REMARK 500 PHE B 102 0.10 SIDE CHAIN REMARK 500 TYR B 142 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 125 -10.05 REMARK 500 GLU A 169 10.72 REMARK 500 MET B 89 -10.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 ND1 REMARK 620 2 CYS A 154 SG 112.5 REMARK 620 3 CYS A 155 SG 106.4 108.5 REMARK 620 4 CYS A 165 SG 114.9 105.1 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 171 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 143 ND1 REMARK 620 2 CYS B 154 SG 56.5 REMARK 620 3 CYS B 155 SG 54.4 55.9 REMARK 620 4 CYS B 165 SG 120.3 103.7 67.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZN1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE IN THE BTK MOTIF, CHAIN A. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZN2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE IN THE BTK MOTIF, CHAIN B. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4IP A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4IP B 172 DBREF 1B55 A 2 170 UNP Q06187 BTK_HUMAN 2 170 DBREF 1B55 B 2 170 UNP Q06187 BTK_HUMAN 2 170 SEQRES 1 A 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 A 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 A 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 A 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 A 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 A 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 A 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 A 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 A 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 A 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 A 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 A 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 A 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN SEQRES 1 B 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 B 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 B 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 B 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 B 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 B 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 B 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 B 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 B 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 B 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 B 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 B 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 B 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN HET ZN A 1 1 HET 4IP A 171 28 HET ZN B 171 1 HET 4IP B 172 28 HETNAM ZN ZINC ION HETNAM 4IP INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 4IP 2(C6 H16 O18 P4) FORMUL 7 HOH *196(H2 O) HELIX 1 1 PRO A 75 ARG A 77 5 3 HELIX 2 2 GLU A 90 ILE A 95 1 6 HELIX 3 3 GLU A 118 ILE A 132 1 15 HELIX 4 4 PRO B 75 ARG B 77 5 3 HELIX 5 5 SER B 93 ILE B 95 5 3 HELIX 6 6 GLU B 118 ILE B 132 1 15 SHEET 1 A 4 LEU A 6 ARG A 13 0 SHEET 2 A 4 PHE A 25 LEU A 32 -1 N LEU A 32 O LEU A 6 SHEET 3 A 4 LYS A 36 TYR A 40 -1 N TYR A 40 O LEU A 29 SHEET 4 A 4 LYS A 52 ASP A 57 -1 N ILE A 56 O LEU A 37 SHEET 1 B 3 GLY A 109 SER A 115 0 SHEET 2 B 3 TYR A 100 TYR A 106 -1 N TYR A 106 O GLY A 109 SHEET 3 B 3 ILE A 61 THR A 66 -1 N GLU A 65 O GLN A 103 SHEET 1 C 2 LEU B 6 ARG B 13 0 SHEET 2 C 2 PHE B 25 LEU B 32 -1 N LEU B 32 O LEU B 6 SHEET 1 D 2 LYS B 36 TYR B 40 0 SHEET 2 D 2 LYS B 52 ASP B 57 -1 N ILE B 56 O LEU B 37 SHEET 1 E 2 ILE B 61 THR B 66 0 SHEET 2 E 2 PHE B 102 TYR B 106 -1 N VAL B 105 O THR B 62 LINK ZN ZN A 1 ND1 HIS A 143 1555 1555 1.91 LINK ZN ZN A 1 SG CYS A 154 1555 1555 2.35 LINK ZN ZN A 1 SG CYS A 155 1555 1555 2.28 LINK ZN ZN A 1 SG CYS A 165 1555 1555 1.97 LINK ND1 HIS B 143 ZN ZN B 171 1555 1555 2.36 LINK SG CYS B 154 ZN ZN B 171 1555 1555 3.25 LINK SG CYS B 155 ZN ZN B 171 1555 1555 3.44 LINK SG CYS B 165 ZN ZN B 171 1555 1555 2.66 SITE 1 ZN1 5 ZN A 1 HIS A 143 CYS A 154 CYS A 155 SITE 2 ZN1 5 CYS A 165 SITE 1 ZN2 5 ZN B 171 HIS B 143 CYS B 154 CYS B 155 SITE 2 ZN2 5 CYS B 165 SITE 1 AC1 4 HIS A 143 CYS A 154 CYS A 155 CYS A 165 SITE 1 AC2 5 TYR B 142 HIS B 143 CYS B 154 CYS B 155 SITE 2 AC2 5 CYS B 165 SITE 1 AC3 14 LYS A 12 SER A 14 GLN A 15 GLN A 16 SITE 2 AC3 14 LYS A 17 LYS A 18 SER A 21 PRO A 22 SITE 3 AC3 14 ASN A 24 ARG A 28 TYR A 39 LYS A 53 SITE 4 AC3 14 HOH A 197 HOH A 222 SITE 1 AC4 14 LYS B 12 SER B 14 GLN B 15 GLN B 16 SITE 2 AC4 14 LYS B 17 LYS B 18 SER B 21 ASN B 24 SITE 3 AC4 14 ARG B 28 TYR B 39 LYS B 53 HOH B 185 SITE 4 AC4 14 HOH B 187 HOH B 222 CRYST1 110.205 110.205 215.528 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009074 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004640 0.00000 MTRIX1 1 -0.330795 0.942714 -0.043176 1.59142 1 MTRIX2 1 0.943695 0.330633 -0.011059 0.54895 1 MTRIX3 1 0.003850 -0.044403 -0.999006 109.50422 1