PDB Short entry for 1B7E HEADER TRANSFERASE INHIBITOR 22-JAN-99 1B7E TITLE TRANSPOSASE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (TRANSPOSASE INHIBITOR PROTEIN FROM TN5); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPOSASE, POLYNUCLEOTIDYL TRANSFERASE, HYDROLASE, TRANSFERASE KEYWDS 2 INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR D.R.DAVIES,L.M.BRAAM,W.S.REZNIKOFF,I.RAYMENT REVDAT 6 21-DEC-22 1B7E 1 REMARK SEQADV LINK REVDAT 5 04-OCT-17 1B7E 1 REMARK REVDAT 4 24-FEB-09 1B7E 1 VERSN REVDAT 3 15-FEB-05 1B7E 1 JRNL REVDAT 2 20-MAR-00 1B7E 3 SEQADV SEQRES HEADER ATOM REVDAT 1 21-APR-99 1B7E 0 JRNL AUTH D.R.DAVIES,L.M.BRAAM,W.S.REZNIKOFF,I.RAYMENT JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF A TN5 TRANSPOSASE-RELATED JRNL TITL 2 PROTEIN DETERMINED TO 2.9A RESOLUTION. JRNL REF J.BIOL.CHEM. V. 274 11904 1999 JRNL REFN ISSN 0021-9258 JRNL PMID 10207011 JRNL DOI 10.1074/JBC.274.17.11904 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 12174 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 12174 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2887 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.015 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.630 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.009 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.010 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT PROTGEO REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-99. REMARK 100 THE DEPOSITION ID IS D_1000000344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0273,1.0720,1.1201 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 2000, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 2.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.20400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STRUCTURE WAS INDEPENDENTLY SOLVED USING MIR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 90.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 90.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 181.80000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 71.90000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 56 REMARK 465 GLN A 57 REMARK 465 GLU A 58 REMARK 465 GLY A 59 REMARK 465 ALA A 60 REMARK 465 TYR A 61 REMARK 465 ARG A 62 REMARK 465 PHE A 63 REMARK 465 ILE A 64 REMARK 465 ARG A 65 REMARK 465 ASN A 66 REMARK 465 PRO A 67 REMARK 465 ASN A 68 REMARK 465 VAL A 69 REMARK 465 HIS A 105 REMARK 465 GLN A 106 REMARK 465 VAL A 107 REMARK 465 ALA A 108 REMARK 465 GLU A 109 REMARK 465 GLU A 110 REMARK 465 LEU A 111 REMARK 465 GLY A 112 REMARK 465 LYS A 113 REMARK 465 LEU A 114 REMARK 465 GLY A 115 REMARK 465 SER A 116 REMARK 465 ILE A 117 REMARK 465 GLN A 118 REMARK 465 ASP A 119 REMARK 465 LYS A 120 REMARK 465 SER A 121 REMARK 465 ARG A 122 REMARK 465 GLY A 123 REMARK 465 VAL A 247 REMARK 465 ASP A 248 REMARK 465 LYS A 249 REMARK 465 ARG A 250 REMARK 465 GLY A 251 REMARK 465 LYS A 252 REMARK 465 ARG A 253 REMARK 465 LYS A 254 REMARK 465 ASN A 255 REMARK 465 GLU A 344 REMARK 465 GLU A 345 REMARK 465 GLY A 473 REMARK 465 ILE A 474 REMARK 465 LYS A 475 REMARK 465 ILE A 476 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 ALA A 94 CB REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 VAL A 246 CG1 CG2 REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 341 CG CD OE1 NE2 REMARK 470 ARG A 342 CG CD NE CZ NH1 NH2 REMARK 470 MET A 343 CG SD CE REMARK 470 PRO A 346 CG CD REMARK 470 ASP A 347 CG OD1 OD2 REMARK 470 ASN A 348 CG OD1 ND2 REMARK 470 LEU A 349 CG CD1 CD2 REMARK 470 MET A 352 CG SD CE REMARK 470 ASP A 400 CG OD1 OD2 REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 LYS A 419 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 217 O HOH A 515 1.88 REMARK 500 O ASP A 317 OG1 THR A 320 1.94 REMARK 500 O PHE A 137 NH2 ARG A 324 1.97 REMARK 500 O ILE A 270 N LEU A 279 2.17 REMARK 500 N ILE A 270 O LEU A 279 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 407 OD2 ASP A 468 2665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 161 CD GLU A 161 OE2 0.073 REMARK 500 GLU A 190 CD GLU A 190 OE2 0.085 REMARK 500 GLU A 219 CD GLU A 219 OE1 0.079 REMARK 500 GLU A 233 CD GLU A 233 OE1 0.075 REMARK 500 GLU A 326 CD GLU A 326 OE2 0.078 REMARK 500 GLU A 327 CD GLU A 327 OE2 0.071 REMARK 500 GLU A 339 CD GLU A 339 OE1 0.078 REMARK 500 GLU A 368 CD GLU A 368 OE1 0.079 REMARK 500 GLU A 384 CD GLU A 384 OE1 0.083 REMARK 500 GLU A 386 CD GLU A 386 OE1 0.076 REMARK 500 GLU A 389 CD GLU A 389 OE2 0.075 REMARK 500 GLU A 394 CD GLU A 394 OE2 0.072 REMARK 500 GLU A 451 CD GLU A 451 OE1 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 74 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG A 75 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ALA A 79 CB - CA - C ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 THR A 99 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ALA A 169 CB - CA - C ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 188 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP A 188 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 199 CA - CB - CG ANGL. DEV. = -14.9 DEGREES REMARK 500 ARG A 210 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 PRO A 214 C - N - CD ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP A 217 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 217 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TYR A 223 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ILE A 287 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 THR A 302 CA - CB - CG2 ANGL. DEV. = -8.4 DEGREES REMARK 500 VAL A 306 N - CA - CB ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 322 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 322 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 351 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 SER A 392 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 GLU A 394 CB - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 415 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 437 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 461 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 461 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP A 461 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 -63.82 -25.39 REMARK 500 GLU A 88 7.50 -65.91 REMARK 500 TRP A 148 146.02 -172.24 REMARK 500 PRO A 151 102.79 -57.63 REMARK 500 PRO A 154 -87.67 -55.79 REMARK 500 SER A 162 -4.17 -56.04 REMARK 500 MET A 180 -38.85 -32.06 REMARK 500 CYS A 187 -176.21 -179.51 REMARK 500 HIS A 213 -161.30 -127.52 REMARK 500 ARG A 215 -169.90 -109.15 REMARK 500 LEU A 224 -71.47 -55.08 REMARK 500 ASP A 226 -70.57 -63.36 REMARK 500 LYS A 244 -161.71 -105.91 REMARK 500 PRO A 257 179.87 -55.76 REMARK 500 GLN A 274 -58.51 -14.42 REMARK 500 ILE A 287 -63.36 -96.35 REMARK 500 LYS A 297 112.62 -173.77 REMARK 500 VAL A 306 2.14 -155.03 REMARK 500 LEU A 309 -38.91 -39.75 REMARK 500 LYS A 333 -18.36 -48.75 REMARK 500 THR A 334 -70.06 -85.97 REMARK 500 ALA A 336 -68.46 -96.67 REMARK 500 ARG A 351 -78.17 -67.85 REMARK 500 LEU A 356 -36.95 -36.92 REMARK 500 ALA A 378 -18.85 -42.06 REMARK 500 LEU A 381 99.53 -53.90 REMARK 500 GLU A 384 -79.29 -55.70 REMARK 500 SER A 390 27.30 -78.64 REMARK 500 LEU A 397 -165.68 -71.05 REMARK 500 ASP A 409 70.54 -113.75 REMARK 500 LYS A 414 -64.57 -132.81 REMARK 500 LYS A 416 108.87 -56.45 REMARK 500 ASP A 437 66.17 74.37 REMARK 500 SER A 438 -72.57 -72.37 REMARK 500 LYS A 439 0.27 -50.72 REMARK 500 ARG A 440 77.83 51.94 REMARK 500 GLU A 451 -72.54 -65.48 REMARK 500 LYS A 459 -30.60 -39.90 REMARK 500 MET A 470 -26.78 -30.18 REMARK 500 ALA A 471 -69.56 -102.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TPT A 481 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TPT A 480 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 TPT A 480 N1 80.0 REMARK 620 3 TPT A 480 N2 162.4 83.6 REMARK 620 4 TPT A 480 N3 120.6 158.9 76.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: DDE REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE "DDE" MOTIF REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPT A 480 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPT A 481 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FOLLOWING RESIDUES WERE DISORDERED BEYOND REMARK 999 THE BETA-CARBON AND THUS WERE MODELED AS ALANINE: REMARK 999 GLU72, GLU88, ASP133, ARG215, LYS216, LYS244, VAL246, GLN341, REMARK 999 ARG342, MET343, PRO346, ASP347, ASN348, MET352, ASP400, REMARK 999 AND GLU 417 REMARK 999 ALA 94 WAS DISORDERED BEYOND THE ALPHA-CARBON AND REMARK 999 WAS MODELED AS GLYCINE. DBREF 1B7E A 56 476 GB 622948 AAB60064 56 476 SEQADV 1B7E A GB 622948 ALA 361 DELETION SEQRES 1 A 420 MET GLN GLU GLY ALA TYR ARG PHE ILE ARG ASN PRO ASN SEQRES 2 A 420 VAL SER ALA GLU ALA ILE ARG LYS ALA GLY ALA MET GLN SEQRES 3 A 420 THR VAL LYS LEU ALA GLN GLU PHE PRO GLU LEU LEU ALA SEQRES 4 A 420 ILE GLU ASP THR THR SER LEU SER TYR ARG HIS GLN VAL SEQRES 5 A 420 ALA GLU GLU LEU GLY LYS LEU GLY SER ILE GLN ASP LYS SEQRES 6 A 420 SER ARG GLY TRP TRP VAL HIS SER VAL LEU LEU LEU GLU SEQRES 7 A 420 ALA THR THR PHE ARG THR VAL GLY LEU LEU HIS GLN GLU SEQRES 8 A 420 TRP TRP MET ARG PRO ASP ASP PRO ALA ASP ALA ASP GLU SEQRES 9 A 420 LYS GLU SER GLY LYS TRP LEU ALA ALA ALA ALA THR SER SEQRES 10 A 420 ARG LEU ARG MET GLY SER MET MET SER ASN VAL ILE ALA SEQRES 11 A 420 VAL CYS ASP ARG GLU ALA ASP ILE HIS ALA TYR LEU GLN SEQRES 12 A 420 ASP LYS LEU ALA HIS ASN GLU ARG PHE VAL VAL ARG SER SEQRES 13 A 420 LYS HIS PRO ARG LYS ASP VAL GLU SER GLY LEU TYR LEU SEQRES 14 A 420 TYR ASP HIS LEU LYS ASN GLN PRO GLU LEU GLY GLY TYR SEQRES 15 A 420 GLN ILE SER ILE PRO GLN LYS GLY VAL VAL ASP LYS ARG SEQRES 16 A 420 GLY LYS ARG LYS ASN ARG PRO ALA ARG LYS ALA SER LEU SEQRES 17 A 420 SER LEU ARG SER GLY ARG ILE THR LEU LYS GLN GLY ASN SEQRES 18 A 420 ILE THR LEU ASN ALA VAL LEU ALA GLU GLU ILE ASN PRO SEQRES 19 A 420 PRO LYS GLY GLU THR PRO LEU LYS TRP LEU LEU LEU THR SEQRES 20 A 420 SER GLU PRO VAL GLU SER LEU ALA GLN ALA LEU ARG VAL SEQRES 21 A 420 ILE ASP ILE TYR THR HIS ARG TRP ARG ILE GLU GLU PHE SEQRES 22 A 420 HIS LYS ALA TRP LYS THR GLY ALA GLY ALA GLU ARG GLN SEQRES 23 A 420 ARG MET GLU GLU PRO ASP ASN LEU GLU ARG MET VAL SER SEQRES 24 A 420 ILE LEU SER PHE VAL ALA VAL ARG LEU LEU GLN LEU ARG SEQRES 25 A 420 GLU SER PHE THR LEU PRO GLN ALA LEU ARG ALA GLN GLY SEQRES 26 A 420 LEU LEU LYS GLU ALA GLU HIS VAL GLU SER GLN SER ALA SEQRES 27 A 420 GLU THR VAL LEU THR PRO ASP GLU CYS GLN LEU LEU GLY SEQRES 28 A 420 TYR LEU ASP LYS GLY LYS ARG LYS ARG LYS GLU LYS GLY SEQRES 29 A 420 SER LEU GLN TRP ALA TYR MET ALA ILE ALA ARG LEU GLY SEQRES 30 A 420 GLY PHE MET ASP SER LYS ARG THR GLY ILE ALA SER TRP SEQRES 31 A 420 GLY ALA LEU TRP GLU GLY TRP GLU ALA LEU GLN SER LYS SEQRES 32 A 420 LEU ASP GLY PHE LEU ALA ALA LYS ASP LEU MET ALA GLN SEQRES 33 A 420 GLY ILE LYS ILE HET TPT A 480 19 HET TPT A 481 19 HETNAM TPT 2,2':6',2''-TERPYRIDINE PLATINUM(II) CHLORIDE FORMUL 2 TPT 2(C15 H11 CL N3 PT 1+) FORMUL 4 HOH *56(H2 O) HELIX 1 H1 ALA A 71 ALA A 86 1 16 HELIX 2 H2 PRO A 154 SER A 162 1 9 HELIX 3 H3 LYS A 164 ASN A 182 1 19 HELIX 4 H4 ILE A 193 HIS A 203 1 11 HELIX 5 H5 LEU A 224 LYS A 229 1 6 HELIX 6 H6 LEU A 309 ALA A 336 1 28 HELIX 7 H8 LEU A 382 VAL A 388 1 7 HELIX 8 H9 PRO A 399 LEU A 408 1 10 HELIX 9 H10 LEU A 422 GLY A 433 1 12 HELIX 10 H11 TRP A 446 LEU A 469 1 24 SHEET 1 A 9 GLY A 235 ILE A 241 0 SHEET 2 A 9 ARG A 259 THR A 271 -1 N LEU A 265 O GLY A 235 SHEET 3 A 9 THR A 278 GLU A 286 -1 N GLU A 285 O SER A 264 SHEET 4 A 9 LYS A 297 THR A 302 -1 N THR A 302 O ASN A 280 SHEET 5 A 9 ARG A 206 SER A 211 -1 N VAL A 209 O LEU A 301 SHEET 6 A 9 VAL A 183 ARG A 189 1 N ALA A 185 O ARG A 206 SHEET 7 A 9 LEU A 92 SER A 100 1 N LEU A 92 O ILE A 184 SHEET 8 A 9 TRP A 125 GLU A 133 -1 N LEU A 132 O LEU A 93 SHEET 9 A 9 GLY A 141 TRP A 148 -1 N TRP A 148 O TRP A 125 LINK SG CYS A 402 PT1 TPT A 480 1555 1555 2.50 SITE 1 DDE 3 ASP A 97 ASP A 188 GLU A 326 SITE 1 AC1 5 GLU A 394 PRO A 399 CYS A 402 GLN A 403 SITE 2 AC1 5 TRP A 424 SITE 1 AC2 5 GLN A 87 GLU A 190 LYS A 212 HIS A 213 SITE 2 AC2 5 PRO A 214 CRYST1 181.800 71.900 41.300 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005500 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024213 0.00000