PDB Short entry for 1BAF HEADER IMMUNE SYSTEM 16-JAN-92 1BAF TITLE 2.9 ANGSTROMS RESOLUTION STRUCTURE OF AN ANTI-DINITROPHENYL-SPIN-LABEL TITLE 2 MONOCLONAL ANTIBODY FAB FRAGMENT WITH BOUND HAPTEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-KAPPA AN02 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1-KAPPA AN02 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LEAHY,A.T.BRUNGER,R.O.FOX,T.R.HYNES REVDAT 5 18-SEP-13 1BAF 1 SOURCE VERSN HEADER REVDAT 4 25-AUG-09 1BAF 1 SOURCE REVDAT 3 24-FEB-09 1BAF 1 VERSN REVDAT 2 01-APR-03 1BAF 1 JRNL REVDAT 1 31-JAN-94 1BAF 0 JRNL AUTH A.T.BRUNGER,D.J.LEAHY,T.R.HYNES,R.O.FOX JRNL TITL 2.9 A RESOLUTION STRUCTURE OF AN JRNL TITL 2 ANTI-DINITROPHENYL-SPIN-LABEL MONOCLONAL ANTIBODY FAB JRNL TITL 3 FRAGMENT WITH BOUND HAPTEN. JRNL REF J.MOL.BIOL. V. 221 239 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1920408 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.J.LEAHY,T.R.HYNES,H.M.MCCONNELL,R.O.FOX REMARK 1 TITL CRYSTALLIZATION OF AN ANTI-2,2,6, REMARK 1 TITL 2 6-TETRAMETHYL-1-PIPERIDINYLOXY-DINITROPHENYL MONOCLONAL REMARK 1 TITL 3 ANTIBODY FAB FRAGMENT WITH AND WITHOUT BOUND HAPTEN REMARK 1 REF J.MOL.BIOL. V. 203 829 1988 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.J.LEAHY,G.S.RULE,M.M.WHITTAKER,H.M.MCCONNELL REMARK 1 TITL SEQUENCES OF 12 MONOCLONAL ANTI-DINITROPHENYL SPIN-LABEL REMARK 1 TITL 2 ANTIBODIES FOR NMR STUDIES REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 85 3661 1988 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.BALAKRISHNAN,F.J.HSU,D.G.HAFEMAN,H.M.MCCONNELL REMARK 1 TITL MONOCLONAL ANTIBODIES TO A NITROXIDE LIPID HAPTEN REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V. 721 30 1982 REMARK 1 REFN ISSN 0006-3002 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 249.20000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 186.90000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.30000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 311.50000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 249.20000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 124.60000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 62.30000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 186.90000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 311.50000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 198 NE2 HIS L 198 CD2 -0.076 REMARK 500 HIS H 201 NE2 HIS H 201 CD2 -0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR L 30 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET L 32 CA - CB - CG ANGL. DEV. = -16.5 DEGREES REMARK 500 TRP L 34 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP L 34 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 THR L 68 CA - CB - CG2 ANGL. DEV. = 8.6 DEGREES REMARK 500 LEU L 72 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG L 76 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 TRP L 90 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP L 148 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP L 148 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP L 163 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP L 163 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP H 35 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP H 35 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP H 37 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP H 37 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG H 39 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG H 39 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TRP H 48 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP H 48 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 MET H 52 CA - CB - CG ANGL. DEV. = -11.2 DEGREES REMARK 500 MET H 52 CG - SD - CE ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG H 67 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG H 67 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TRP H 100 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP H 100 CB - CG - CD1 ANGL. DEV. = -8.3 DEGREES REMARK 500 TRP H 100 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP H 100 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP H 105 CD1 - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TRP H 105 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR H 124 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP H 156 CD1 - CG - CD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 TRP H 156 CG - CD1 - NE1 ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP H 156 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 VAL H 165 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 TYR H 177 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO L 39 107.97 -52.48 REMARK 500 ASP L 49 56.97 34.24 REMARK 500 THR L 50 -58.14 72.38 REMARK 500 VAL L 59 9.89 -65.56 REMARK 500 THR L 68 -22.15 68.23 REMARK 500 ALA L 83 -177.00 -175.40 REMARK 500 SER L 91 -157.03 -126.28 REMARK 500 TYR L 93 77.16 24.09 REMARK 500 PRO L 95 -152.47 -81.58 REMARK 500 SER L 201 119.01 174.23 REMARK 500 ARG L 211 -4.00 -49.19 REMARK 500 GLU L 213 -133.12 -125.69 REMARK 500 SER H 7 -170.24 -173.55 REMARK 500 SER H 15 -9.27 76.58 REMARK 500 ILE H 29 22.37 -72.44 REMARK 500 ASP H 32 171.44 58.79 REMARK 500 TYR H 33 152.50 67.61 REMARK 500 ASN H 44 -23.58 179.61 REMARK 500 SER H 85 55.31 26.73 REMARK 500 GLU H 89 -5.31 -55.80 REMARK 500 ALA H 92 -169.46 -173.95 REMARK 500 TRP H 100 92.38 66.51 REMARK 500 TYR H 104 90.94 58.42 REMARK 500 THR H 118 79.48 -44.58 REMARK 500 SER H 130 -53.38 56.99 REMARK 500 ALA H 131 -73.23 46.06 REMARK 500 ALA H 132 -178.24 168.38 REMARK 500 THR H 134 -70.53 -147.93 REMARK 500 ASN H 135 -168.76 -167.15 REMARK 500 SER H 174 61.58 -164.28 REMARK 500 PRO H 189 30.07 -79.62 REMARK 500 THR H 194 122.65 -32.38 REMARK 500 ASP H 216 -68.64 61.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR H 104 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NPP L 250 DBREF 1BAF L 3 213 GB 437099 AAC28911 3 214 DBREF 1BAF H 1 217 GB 1513182 AAB06744 19 235 SEQADV 1BAF GLU L 17 GB 437099 GLN 17 CONFLICT SEQADV 1BAF MET L 21 GB 437099 ILE 21 CONFLICT SEQADV 1BAF L GB 437099 SER 30 DELETION SEQADV 1BAF L GB 437099 SER 31 DELETION SEQADV 1BAF TYR L 30 GB 437099 ARG 32 CONFLICT SEQADV 1BAF TYR L 31 GB 437099 PHE 33 CONFLICT SEQADV 1BAF MET L 32 GB 437099 LEU 34 CONFLICT SEQADV 1BAF TYR L 33 GB 437099 HIS 35 CONFLICT SEQADV 1BAF PRO L 39 GB 437099 SER 41 CONFLICT SEQADV 1BAF SER L 41 GB 437099 ALA 43 CONFLICT SEQADV 1BAF ARG L 44 GB 437099 LYS 46 CONFLICT SEQADV 1BAF LEU L 46 GB 437099 TRP 48 CONFLICT SEQADV 1BAF ASN L 52 GB 437099 LYS 54 CONFLICT SEQADV 1BAF SER L 55 GB 437099 PRO 57 CONFLICT SEQADV 1BAF VAL L 59 GB 437099 ALA 61 CONFLICT SEQADV 1BAF ARG L 76 GB 437099 SER 78 CONFLICT SEQADV 1BAF THR L 84 GB 437099 SER 86 CONFLICT SEQADV 1BAF TYR L 86 GB 437099 PHE 88 CONFLICT SEQADV 1BAF GLN L 88 GB 437099 HIS 90 CONFLICT SEQADV 1BAF PRO L 94 GB 437099 INSERTION SEQADV 1BAF ILE L 96 GB 437099 LEU 97 CONFLICT SEQADV 1BAF VAL L 100 GB 437099 ALA 101 CONFLICT SEQADV 1BAF GLN H 18 GB 1513182 LEU 36 CONFLICT SEQADV 1BAF ILE H 29 GB 1513182 VAL 47 CONFLICT SEQADV 1BAF ASP H 32 GB 1513182 GLU 50 CONFLICT SEQADV 1BAF MET H 49 GB 1513182 LEU 67 CONFLICT SEQADV 1BAF MET H 52 GB 1513182 ILE 70 CONFLICT SEQADV 1BAF SER H 53 GB 1513182 ASN 71 CONFLICT SEQADV 1BAF ARG H 59 GB 1513182 SER 77 CONFLICT SEQADV 1BAF ARG H 65 GB 1513182 LYS 83 CONFLICT SEQADV 1BAF LYS H 84 GB 1513182 ASN 102 CONFLICT SEQADV 1BAF PHE H 95 GB 1513182 TYR 113 CONFLICT SEQADV 1BAF H GB 1513182 ASP 116 DELETION SEQADV 1BAF GLY H 99 GB 1513182 SER 118 CONFLICT SEQADV 1BAF PRO H 101 GB 1513182 INSERTION SEQADV 1BAF LEU H 102 GB 1513182 PHE 120 CONFLICT SEQADV 1BAF GLN H 110 GB 1513182 LEU 128 CONFLICT SEQADV 1BAF SER H 112 GB 1513182 THR 130 CONFLICT SEQADV 1BAF GLU H 115 GB 1513182 ALA 133 CONFLICT SEQADV 1BAF PRO H 189 GB 1513182 THR 207 CONFLICT SEQADV 1BAF ARG H 190 GB 1513182 TRP 208 CONFLICT SEQRES 1 L 214 GLN ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 214 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 L 214 SER SER VAL TYR TYR MET TYR TRP TYR GLN GLN LYS PRO SEQRES 4 L 214 GLY SER SER PRO ARG LEU LEU ILE TYR ASP THR SER ASN SEQRES 5 L 214 LEU ALA SER GLY VAL PRO VAL ARG PHE SER GLY SER GLY SEQRES 6 L 214 SER GLY THR SER TYR SER LEU THR ILE SER ARG MET GLU SEQRES 7 L 214 ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 L 214 SER TYR PRO PRO ILE THR PHE GLY VAL GLY THR LYS LEU SEQRES 9 L 214 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 217 ASP VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 217 PRO SER GLN SER GLN SER LEU THR CYS THR VAL THR GLY SEQRES 3 H 217 TYR SER ILE THR SER ASP TYR ALA TRP ASN TRP ILE ARG SEQRES 4 H 217 GLN PHE PRO GLY ASN LYS LEU GLU TRP MET GLY TYR MET SEQRES 5 H 217 SER TYR SER GLY SER THR ARG TYR ASN PRO SER LEU ARG SEQRES 6 H 217 SER ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN SEQRES 7 H 217 PHE PHE LEU GLN LEU LYS SER VAL THR THR GLU ASP THR SEQRES 8 H 217 ALA THR TYR PHE CYS ALA ARG GLY TRP PRO LEU ALA TYR SEQRES 9 H 217 TRP GLY GLN GLY THR GLN VAL SER VAL SER GLU ALA LYS SEQRES 10 H 217 THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER SEQRES 11 H 217 ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU SEQRES 12 H 217 VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP SEQRES 13 H 217 ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO SEQRES 14 H 217 ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER SEQRES 15 H 217 VAL THR VAL PRO SER SER PRO ARG PRO SER GLU THR VAL SEQRES 16 H 217 THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL SEQRES 17 H 217 ASP LYS LYS ILE VAL PRO ARG ASP CYS HET NPP L 250 28 HETNAM NPP N-(2-AMINO-ETHYL)-4,6-DINITRO-N'-(2,2,6,6-TETRAMETHYL- HETNAM 2 NPP 1-OXY-PIPERIDIN-4-YL)-BENZENE-1,3-DIAMINE FORMUL 3 NPP C17 H27 N6 O5 1- HELIX 1 1 GLU L 78 ALA L 82 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 THR H 87 THR H 91 5 5 HELIX 5 5 SER H 158 SER H 160 5 3 SHEET 1 A 4 LEU L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 N THR L 22 O SER L 7 SHEET 3 A 4 SER L 69 ILE L 74 -1 O TYR L 70 N CYS L 23 SHEET 4 A 4 PHE L 61 SER L 66 -1 O SER L 62 N THR L 73 SHEET 1 B 5 ASN L 52 LEU L 53 0 SHEET 2 B 5 ARG L 44 TYR L 48 -1 N TYR L 48 O ASN L 52 SHEET 3 B 5 TYR L 31 GLN L 37 -1 N TRP L 34 O ILE L 47 SHEET 4 B 5 ALA L 83 TRP L 90 -1 O THR L 84 N GLN L 37 SHEET 5 B 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 89 SHEET 1 C 6 ASN L 52 LEU L 53 0 SHEET 2 C 6 ARG L 44 TYR L 48 -1 N TYR L 48 O ASN L 52 SHEET 3 C 6 TYR L 31 GLN L 37 -1 N TRP L 34 O ILE L 47 SHEET 4 C 6 ALA L 83 TRP L 90 -1 O THR L 84 N GLN L 37 SHEET 5 C 6 THR L 102 LEU L 106 -1 O THR L 102 N TYR L 85 SHEET 6 C 6 ILE L 10 ALA L 13 1 N MET L 11 O LYS L 103 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 D 4 VAL L 159 TRP L 163 -1 O LEU L 160 N THR L 178 SHEET 1 E 4 SER L 153 ARG L 155 0 SHEET 2 E 4 ILE L 144 ILE L 150 -1 O TRP L 148 N ARG L 155 SHEET 3 E 4 SER L 191 HIS L 198 -1 O THR L 193 N LYS L 149 SHEET 4 E 4 SER L 201 ASN L 210 -1 N SER L 201 O HIS L 198 SHEET 1 F 4 GLN H 3 GLN H 5 0 SHEET 2 F 4 GLN H 18 THR H 25 -1 N THR H 23 O GLN H 5 SHEET 3 F 4 GLN H 78 LEU H 83 -1 O PHE H 79 N CYS H 22 SHEET 4 F 4 ILE H 68 ASP H 73 -1 O SER H 69 N GLN H 82 SHEET 1 G 6 LEU H 11 VAL H 12 0 SHEET 2 G 6 THR H 109 VAL H 113 1 O SER H 112 N VAL H 12 SHEET 3 G 6 ALA H 92 GLY H 99 -1 O ALA H 92 N VAL H 111 SHEET 4 G 6 ALA H 34 GLN H 40 -1 O ALA H 34 N GLY H 99 SHEET 5 G 6 LEU H 46 SER H 53 -1 O GLU H 47 N ARG H 39 SHEET 6 G 6 THR H 58 TYR H 60 -1 O ARG H 59 N TYR H 51 SHEET 1 H 4 SER H 122 LEU H 126 0 SHEET 2 H 4 MET H 137 TYR H 147 -1 O GLY H 141 N LEU H 126 SHEET 3 H 4 TYR H 177 PRO H 186 -1 N TYR H 177 O TYR H 147 SHEET 4 H 4 VAL H 165 LEU H 172 -1 O HIS H 166 N SER H 182 SHEET 1 I 3 THR H 153 TRP H 156 0 SHEET 2 I 3 THR H 196 HIS H 201 -1 N ASN H 198 O THR H 155 SHEET 3 I 3 THR H 206 LYS H 211 -1 O THR H 206 N HIS H 201 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.01 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.01 SSBOND 3 CYS L 214 CYS H 217 1555 1555 2.02 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 5 CYS H 142 CYS H 197 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 0.73 CISPEP 2 PRO L 94 PRO L 95 0 -1.40 CISPEP 3 TYR L 140 PRO L 141 0 -0.87 CISPEP 4 TRP H 100 PRO H 101 0 -0.76 CISPEP 5 PHE H 148 PRO H 149 0 -1.61 CISPEP 6 GLU H 150 PRO H 151 0 0.18 CISPEP 7 ARG H 190 PRO H 191 0 0.34 SITE 1 AC1 6 TRP H 100 TYR L 31 TYR L 33 ASP L 49 SITE 2 AC1 6 GLN L 88 TRP L 90 CRYST1 73.230 73.230 373.800 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013656 0.007884 0.000000 0.00000 SCALE2 0.000000 0.015768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002675 0.00000