PDB Short entry for 1BNL HEADER EXTRACELLULAR MATRIX 30-JUL-98 1BNL TITLE ZINC DEPENDENT DIMERS OBSERVED IN CRYSTALS OF HUMAN TITLE 2 ENDOSTATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGEN XVIII; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: ENDOSTATIN, 20-KDA COLLAGEN XVIII C-TERMINAL COMPND 5 GLOBULAR DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: SECRETED; SOURCE 6 GENE: COLLAGEN XVIII; SOURCE 7 EXPRESSION_SYSTEM: NS/0 MURINE MYELOMA CELLS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDCS-FC(D4K) KEYWDS ENDOSTATIN, COLLAGEN XVIII, COLLAGEN, ANTIANGIOGENIC, KEYWDS 2 ANGIOGENIC, ANGIOGENISIS, CANCER, ZINC, EXTRACELLULAR MATRIX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-H.DING,K.JAVAHERIAN,K.-M.LO,R.CHOPRA,T.BOEHM,J.LANCIOTTI, AUTHOR 2 B.A.HARRIS,Y.LI,R.SHAPIRO,E.HOHENESTER,R.TIMPL,J.FOLKMAN, AUTHOR 3 D.C.WILEY REVDAT 3 24-FEB-09 1BNL 1 VERSN REVDAT 2 02-DEC-98 1BNL 3 HET COMPND REMARK TITLE REVDAT 2 2 3 HETATM SEQADV CRYST1 SSBOND REVDAT 2 3 3 HEADER TER LINK ATOM REVDAT 2 4 3 SOURCE SEQRES AUTHOR MTRIX REVDAT 2 5 3 FORMUL JRNL KEYWDS HETSYN REVDAT 2 6 3 CONECT HETNAM REVDAT 1 14-OCT-98 1BNL 0 JRNL AUTH Y.H.DING,K.JAVAHERIAN,K.M.LO,R.CHOPRA,T.BOEHM, JRNL AUTH 2 J.LANCIOTTI,B.A.HARRIS,Y.LI,R.SHAPIRO,E.HOHENESTER, JRNL AUTH 3 R.TIMPL,J.FOLKMAN,D.C.WILEY JRNL TITL ZINC-DEPENDENT DIMERS OBSERVED IN CRYSTALS OF JRNL TITL 2 HUMAN ENDOSTATIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 95 10443 1998 JRNL REFN ISSN 0027-8424 JRNL PMID 9724722 JRNL DOI 10.1073/PNAS.95.18.10443 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 18175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1272 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5528 REMARK 3 NUCLEIC ACID ATOMS : NULL REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.03 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BNL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.35650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.13300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.35650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.13300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 27 CE1 PHE D 34 3455 0.72 REMARK 500 CZ ARG A 27 CE1 PHE B 34 3445 0.78 REMARK 500 NH2 ARG A 27 CE1 PHE B 34 3445 0.85 REMARK 500 CZ ARG C 27 CE1 PHE D 34 3455 0.96 REMARK 500 NH2 ARG C 27 CD1 PHE D 34 3455 1.13 REMARK 500 NH2 ARG A 27 CD1 PHE B 34 3445 1.13 REMARK 500 CZ ARG A 27 CD1 PHE B 34 3445 1.44 REMARK 500 NH1 ARG A 27 CE1 PHE B 34 3445 1.52 REMARK 500 CZ ARG C 27 CD1 PHE D 34 3455 1.57 REMARK 500 NH2 ARG A 27 CZ PHE B 34 3445 1.65 REMARK 500 NH2 ARG C 27 CZ PHE D 34 3455 1.67 REMARK 500 NH1 ARG C 27 CE1 PHE D 34 3455 1.69 REMARK 500 NE ARG A 27 CD1 PHE B 34 3445 1.71 REMARK 500 NE ARG C 27 CD1 PHE D 34 3455 1.87 REMARK 500 NH2 ARG A 38 OD2 ASP C 104 3445 1.87 REMARK 500 NH2 ARG A 27 CG PHE B 34 3445 1.96 REMARK 500 NE ARG A 27 CE1 PHE B 34 3445 2.04 REMARK 500 NH2 ARG C 27 CG PHE D 34 3455 2.07 REMARK 500 CB PRO C 115 NE2 GLN D 116 1565 2.12 REMARK 500 CZ ARG A 27 CZ PHE B 34 3445 2.15 REMARK 500 NE ARG C 27 CE1 PHE D 34 3455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 1 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG A 4 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 MET A 23 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 HIS B 1 O - C - N ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG B 4 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 MET B 23 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG B 24 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 66 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 128 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 129 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 139 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 HIS C 1 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG C 4 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 MET C 23 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG C 24 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 66 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 128 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 129 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 139 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 HIS D 1 O - C - N ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG D 4 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 MET D 23 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG D 24 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 66 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 128 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 129 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG D 139 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 118.57 -164.05 REMARK 500 ARG A 24 -2.06 72.35 REMARK 500 ALA A 68 -50.47 -128.67 REMARK 500 ASP A 76 4.15 81.27 REMARK 500 PHE A 87 40.96 -93.00 REMARK 500 PRO A 112 -9.18 -48.56 REMARK 500 SER A 133 61.69 -155.39 REMARK 500 TYR A 134 42.21 -147.59 REMARK 500 SER A 177 145.64 -172.42 REMARK 500 SER B 2 118.57 -164.06 REMARK 500 ARG B 24 -2.05 72.35 REMARK 500 ALA B 68 -50.50 -128.71 REMARK 500 ASP B 76 5.26 81.49 REMARK 500 PHE B 87 40.96 -92.98 REMARK 500 PRO B 112 -9.11 -48.62 REMARK 500 SER B 133 61.73 -155.35 REMARK 500 TYR B 134 42.25 -147.62 REMARK 500 SER B 177 145.70 -172.39 REMARK 500 SER C 2 118.60 -164.01 REMARK 500 ARG C 24 -2.00 72.33 REMARK 500 ALA C 68 -50.55 -128.65 REMARK 500 ASP C 76 4.23 81.26 REMARK 500 PHE C 87 41.00 -93.00 REMARK 500 PRO C 112 -9.13 -48.60 REMARK 500 SER C 133 61.65 -155.37 REMARK 500 TYR C 134 42.27 -147.59 REMARK 500 SER C 177 145.70 -172.38 REMARK 500 SER D 2 118.55 -164.05 REMARK 500 ARG D 24 -1.99 72.27 REMARK 500 ALA D 68 -50.60 -128.68 REMARK 500 ASP D 76 4.18 81.29 REMARK 500 PHE D 87 40.95 -93.01 REMARK 500 PRO D 112 -9.05 -48.76 REMARK 500 SER D 133 61.75 -155.35 REMARK 500 TYR D 134 42.25 -147.62 REMARK 500 SER D 177 145.65 -172.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 179 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 ND1 REMARK 620 2 HIS A 3 NE2 112.2 REMARK 620 3 HIS A 11 NE2 125.4 116.3 REMARK 620 4 ASP A 76 OD1 87.1 103.8 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 179 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 1 ND1 REMARK 620 2 HIS B 3 NE2 112.2 REMARK 620 3 HIS B 11 NE2 125.4 116.3 REMARK 620 4 ASP B 76 OD1 87.0 104.0 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 179 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 1 ND1 REMARK 620 2 HIS C 3 NE2 112.2 REMARK 620 3 HIS C 11 NE2 125.4 116.3 REMARK 620 4 ASP C 76 OD1 87.0 103.8 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 179 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 1 ND1 REMARK 620 2 HIS D 3 NE2 112.2 REMARK 620 3 HIS D 11 NE2 125.4 116.3 REMARK 620 4 ASP D 76 OD1 87.0 103.8 103.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 179 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 179 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 179 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 179 DBREF 1BNL A 1 178 UNP P39060 COIA1_HUMAN 1334 1511 DBREF 1BNL B 1 178 UNP P39060 COIA1_HUMAN 1334 1511 DBREF 1BNL C 1 178 UNP P39060 COIA1_HUMAN 1334 1511 DBREF 1BNL D 1 178 UNP P39060 COIA1_HUMAN 1334 1511 SEQADV 1BNL ALA A 17 UNP P39060 SER 1350 CONFLICT SEQADV 1BNL ALA B 17 UNP P39060 SER 1350 CONFLICT SEQADV 1BNL ALA C 17 UNP P39060 SER 1350 CONFLICT SEQADV 1BNL ALA D 17 UNP P39060 SER 1350 CONFLICT SEQRES 1 A 178 HIS SER HIS ARG ASP PHE GLN PRO VAL LEU HIS LEU VAL SEQRES 2 A 178 ALA LEU ASN ALA PRO LEU SER GLY GLY MET ARG GLY ILE SEQRES 3 A 178 ARG GLY ALA ASP PHE GLN CYS PHE GLN GLN ALA ARG ALA SEQRES 4 A 178 VAL GLY LEU ALA GLY THR PHE ARG ALA PHE LEU SER SER SEQRES 5 A 178 ARG LEU GLN ASP LEU TYR SER ILE VAL ARG ARG ALA ASP SEQRES 6 A 178 ARG ALA ALA VAL PRO ILE VAL ASN LEU LYS ASP GLU LEU SEQRES 7 A 178 LEU PHE PRO SER TRP GLU ALA LEU PHE SER GLY SER GLU SEQRES 8 A 178 GLY PRO LEU LYS PRO GLY ALA ARG ILE PHE SER PHE ASP SEQRES 9 A 178 GLY LYS ASP VAL LEU ARG HIS PRO THR TRP PRO GLN LYS SEQRES 10 A 178 SER VAL TRP HIS GLY SER ASP PRO ASN GLY ARG ARG LEU SEQRES 11 A 178 THR GLU SER TYR CYS GLU THR TRP ARG THR GLU ALA PRO SEQRES 12 A 178 SER ALA THR GLY GLN ALA SER SER LEU LEU GLY GLY ARG SEQRES 13 A 178 LEU LEU GLY GLN SER ALA ALA SER CYS HIS HIS ALA TYR SEQRES 14 A 178 ILE VAL LEU CYS ILE GLU ASN SER PHE SEQRES 1 B 178 HIS SER HIS ARG ASP PHE GLN PRO VAL LEU HIS LEU VAL SEQRES 2 B 178 ALA LEU ASN ALA PRO LEU SER GLY GLY MET ARG GLY ILE SEQRES 3 B 178 ARG GLY ALA ASP PHE GLN CYS PHE GLN GLN ALA ARG ALA SEQRES 4 B 178 VAL GLY LEU ALA GLY THR PHE ARG ALA PHE LEU SER SER SEQRES 5 B 178 ARG LEU GLN ASP LEU TYR SER ILE VAL ARG ARG ALA ASP SEQRES 6 B 178 ARG ALA ALA VAL PRO ILE VAL ASN LEU LYS ASP GLU LEU SEQRES 7 B 178 LEU PHE PRO SER TRP GLU ALA LEU PHE SER GLY SER GLU SEQRES 8 B 178 GLY PRO LEU LYS PRO GLY ALA ARG ILE PHE SER PHE ASP SEQRES 9 B 178 GLY LYS ASP VAL LEU ARG HIS PRO THR TRP PRO GLN LYS SEQRES 10 B 178 SER VAL TRP HIS GLY SER ASP PRO ASN GLY ARG ARG LEU SEQRES 11 B 178 THR GLU SER TYR CYS GLU THR TRP ARG THR GLU ALA PRO SEQRES 12 B 178 SER ALA THR GLY GLN ALA SER SER LEU LEU GLY GLY ARG SEQRES 13 B 178 LEU LEU GLY GLN SER ALA ALA SER CYS HIS HIS ALA TYR SEQRES 14 B 178 ILE VAL LEU CYS ILE GLU ASN SER PHE SEQRES 1 C 178 HIS SER HIS ARG ASP PHE GLN PRO VAL LEU HIS LEU VAL SEQRES 2 C 178 ALA LEU ASN ALA PRO LEU SER GLY GLY MET ARG GLY ILE SEQRES 3 C 178 ARG GLY ALA ASP PHE GLN CYS PHE GLN GLN ALA ARG ALA SEQRES 4 C 178 VAL GLY LEU ALA GLY THR PHE ARG ALA PHE LEU SER SER SEQRES 5 C 178 ARG LEU GLN ASP LEU TYR SER ILE VAL ARG ARG ALA ASP SEQRES 6 C 178 ARG ALA ALA VAL PRO ILE VAL ASN LEU LYS ASP GLU LEU SEQRES 7 C 178 LEU PHE PRO SER TRP GLU ALA LEU PHE SER GLY SER GLU SEQRES 8 C 178 GLY PRO LEU LYS PRO GLY ALA ARG ILE PHE SER PHE ASP SEQRES 9 C 178 GLY LYS ASP VAL LEU ARG HIS PRO THR TRP PRO GLN LYS SEQRES 10 C 178 SER VAL TRP HIS GLY SER ASP PRO ASN GLY ARG ARG LEU SEQRES 11 C 178 THR GLU SER TYR CYS GLU THR TRP ARG THR GLU ALA PRO SEQRES 12 C 178 SER ALA THR GLY GLN ALA SER SER LEU LEU GLY GLY ARG SEQRES 13 C 178 LEU LEU GLY GLN SER ALA ALA SER CYS HIS HIS ALA TYR SEQRES 14 C 178 ILE VAL LEU CYS ILE GLU ASN SER PHE SEQRES 1 D 178 HIS SER HIS ARG ASP PHE GLN PRO VAL LEU HIS LEU VAL SEQRES 2 D 178 ALA LEU ASN ALA PRO LEU SER GLY GLY MET ARG GLY ILE SEQRES 3 D 178 ARG GLY ALA ASP PHE GLN CYS PHE GLN GLN ALA ARG ALA SEQRES 4 D 178 VAL GLY LEU ALA GLY THR PHE ARG ALA PHE LEU SER SER SEQRES 5 D 178 ARG LEU GLN ASP LEU TYR SER ILE VAL ARG ARG ALA ASP SEQRES 6 D 178 ARG ALA ALA VAL PRO ILE VAL ASN LEU LYS ASP GLU LEU SEQRES 7 D 178 LEU PHE PRO SER TRP GLU ALA LEU PHE SER GLY SER GLU SEQRES 8 D 178 GLY PRO LEU LYS PRO GLY ALA ARG ILE PHE SER PHE ASP SEQRES 9 D 178 GLY LYS ASP VAL LEU ARG HIS PRO THR TRP PRO GLN LYS SEQRES 10 D 178 SER VAL TRP HIS GLY SER ASP PRO ASN GLY ARG ARG LEU SEQRES 11 D 178 THR GLU SER TYR CYS GLU THR TRP ARG THR GLU ALA PRO SEQRES 12 D 178 SER ALA THR GLY GLN ALA SER SER LEU LEU GLY GLY ARG SEQRES 13 D 178 LEU LEU GLY GLN SER ALA ALA SER CYS HIS HIS ALA TYR SEQRES 14 D 178 ILE VAL LEU CYS ILE GLU ASN SER PHE HET ZN A 179 1 HET ZN B 179 1 HET ZN C 179 1 HET ZN D 179 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) HELIX 1 1 ILE A 26 ALA A 39 1 14 HELIX 2 2 TYR A 58 ILE A 60 5 3 HELIX 3 3 ARG A 63 ASP A 65 5 3 HELIX 4 4 TRP A 83 SER A 88 1 6 HELIX 5 5 VAL A 108 ARG A 110 5 3 HELIX 6 6 CYS A 135 TRP A 138 1 4 HELIX 7 7 LEU A 152 GLY A 154 5 3 HELIX 8 8 ILE B 26 ALA B 39 1 14 HELIX 9 9 TYR B 58 ILE B 60 5 3 HELIX 10 10 ARG B 63 ASP B 65 5 3 HELIX 11 11 TRP B 83 SER B 88 1 6 HELIX 12 12 VAL B 108 ARG B 110 5 3 HELIX 13 13 CYS B 135 TRP B 138 1 4 HELIX 14 14 LEU B 152 GLY B 154 5 3 HELIX 15 15 ILE C 26 ALA C 39 1 14 HELIX 16 16 TYR C 58 ILE C 60 5 3 HELIX 17 17 ARG C 63 ASP C 65 5 3 HELIX 18 18 TRP C 83 SER C 88 1 6 HELIX 19 19 VAL C 108 ARG C 110 5 3 HELIX 20 20 CYS C 135 TRP C 138 1 4 HELIX 21 21 LEU C 152 GLY C 154 5 3 HELIX 22 22 ILE D 26 ALA D 39 1 14 HELIX 23 23 TYR D 58 ILE D 60 5 3 HELIX 24 24 ARG D 63 ASP D 65 5 3 HELIX 25 25 TRP D 83 SER D 88 1 6 HELIX 26 26 VAL D 108 ARG D 110 5 3 HELIX 27 27 CYS D 135 TRP D 138 1 4 HELIX 28 28 LEU D 152 GLY D 154 5 3 SHEET 1 A 2 VAL A 9 HIS A 11 0 SHEET 2 A 2 PRO A 70 VAL A 72 1 N PRO A 70 O LEU A 10 SHEET 1 B 3 LEU A 12 ALA A 14 0 SHEET 2 B 3 LEU A 172 GLU A 175 -1 N CYS A 173 O VAL A 13 SHEET 3 B 3 PHE A 46 PHE A 49 -1 N PHE A 49 O LEU A 172 SHEET 1 C 3 SER A 118 TRP A 120 0 SHEET 2 C 3 THR A 146 SER A 151 -1 N SER A 150 O VAL A 119 SHEET 3 C 3 SER A 161 SER A 164 -1 N ALA A 163 O GLY A 147 SHEET 1 D 2 VAL B 9 HIS B 11 0 SHEET 2 D 2 PRO B 70 VAL B 72 1 N PRO B 70 O LEU B 10 SHEET 1 E 3 LEU B 12 ALA B 14 0 SHEET 2 E 3 LEU B 172 GLU B 175 -1 N CYS B 173 O VAL B 13 SHEET 3 E 3 PHE B 46 PHE B 49 -1 N PHE B 49 O LEU B 172 SHEET 1 F 3 SER B 118 TRP B 120 0 SHEET 2 F 3 THR B 146 SER B 151 -1 N SER B 150 O VAL B 119 SHEET 3 F 3 SER B 161 SER B 164 -1 N ALA B 163 O GLY B 147 SHEET 1 G 2 VAL C 9 HIS C 11 0 SHEET 2 G 2 PRO C 70 VAL C 72 1 N PRO C 70 O LEU C 10 SHEET 1 H 3 LEU C 12 ALA C 14 0 SHEET 2 H 3 LEU C 172 GLU C 175 -1 N CYS C 173 O VAL C 13 SHEET 3 H 3 PHE C 46 PHE C 49 -1 N PHE C 49 O LEU C 172 SHEET 1 I 3 SER C 118 TRP C 120 0 SHEET 2 I 3 THR C 146 SER C 151 -1 N SER C 150 O VAL C 119 SHEET 3 I 3 SER C 161 SER C 164 -1 N ALA C 163 O GLY C 147 SHEET 1 J 2 VAL D 9 HIS D 11 0 SHEET 2 J 2 PRO D 70 VAL D 72 1 N PRO D 70 O LEU D 10 SHEET 1 K 3 LEU D 12 ALA D 14 0 SHEET 2 K 3 LEU D 172 GLU D 175 -1 N CYS D 173 O VAL D 13 SHEET 3 K 3 PHE D 46 PHE D 49 -1 N PHE D 49 O LEU D 172 SHEET 1 L 3 SER D 118 TRP D 120 0 SHEET 2 L 3 THR D 146 SER D 151 -1 N SER D 150 O VAL D 119 SHEET 3 L 3 SER D 161 SER D 164 -1 N ALA D 163 O GLY D 147 SSBOND 1 CYS A 33 CYS A 173 1555 1555 2.10 SSBOND 2 CYS A 135 CYS A 165 1555 1555 2.03 SSBOND 3 CYS B 33 CYS B 173 1555 1555 2.10 SSBOND 4 CYS B 135 CYS B 165 1555 1555 2.03 SSBOND 5 CYS C 33 CYS C 173 1555 1555 2.10 SSBOND 6 CYS C 135 CYS C 165 1555 1555 2.03 SSBOND 7 CYS D 33 CYS D 173 1555 1555 2.10 SSBOND 8 CYS D 135 CYS D 165 1555 1555 2.03 LINK ZN ZN A 179 ND1 HIS A 1 1555 1555 2.02 LINK ZN ZN A 179 NE2 HIS A 3 1555 1555 2.04 LINK ZN ZN A 179 NE2 HIS A 11 1555 1555 2.26 LINK ZN ZN A 179 OD1 ASP A 76 1555 1555 2.11 LINK ZN ZN B 179 ND1 HIS B 1 1555 1555 2.02 LINK ZN ZN B 179 NE2 HIS B 3 1555 1555 2.04 LINK ZN ZN B 179 NE2 HIS B 11 1555 1555 2.26 LINK ZN ZN B 179 OD1 ASP B 76 1555 1555 2.10 LINK ZN ZN C 179 ND1 HIS C 1 1555 1555 2.02 LINK ZN ZN C 179 NE2 HIS C 3 1555 1555 2.04 LINK ZN ZN C 179 NE2 HIS C 11 1555 1555 2.26 LINK ZN ZN C 179 OD1 ASP C 76 1555 1555 2.11 LINK ZN ZN D 179 ND1 HIS D 1 1555 1555 2.02 LINK ZN ZN D 179 NE2 HIS D 3 1555 1555 2.04 LINK ZN ZN D 179 NE2 HIS D 11 1555 1555 2.26 LINK ZN ZN D 179 OD1 ASP D 76 1555 1555 2.11 SITE 1 AC1 4 HIS A 1 HIS A 3 HIS A 11 ASP A 76 SITE 1 AC2 4 HIS B 1 HIS B 3 HIS B 11 ASP B 76 SITE 1 AC3 4 HIS C 1 HIS C 3 HIS C 11 ASP C 76 SITE 1 AC4 4 HIS D 1 HIS D 3 HIS D 11 ASP D 76 CRYST1 92.713 74.266 137.805 90.00 102.55 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010786 0.000000 0.002401 0.00000 SCALE2 0.000000 0.013465 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007434 0.00000 MTRIX1 1 -0.969256 -0.033237 0.243799 46.67916 1 MTRIX2 1 0.003878 -0.992775 -0.119928 42.61212 1 MTRIX3 1 0.246023 -0.115296 0.962382 -3.29596 1 MTRIX1 2 0.999851 0.004599 0.016620 31.00356 1 MTRIX2 2 0.004597 -0.999990 0.000159 38.42128 1 MTRIX3 2 0.016621 -0.000082 -0.999862 66.99419 1 MTRIX1 3 -0.974650 -0.021891 0.222660 78.53633 1 MTRIX2 3 0.003764 0.993456 0.114151 -4.21531 1 MTRIX3 3 -0.223702 0.112096 -0.968190 70.21631 1