PDB Short entry for 1BQT HEADER GROWTH FACTOR 18-AUG-98 1BQT TITLE THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I TITLE 2 (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN-LIKE GROWTH FACTOR-I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SOMATOMEDIN C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GROWTH FACTOR, INSULIN EXPDTA SOLUTION NMR NUMMDL 6 AUTHOR A.SATO,S.NISHIMURA,T.OHKUBO,Y.KYOGOKU,S.KOYAMA,M.KOBAYASHI,T.YASUDA, AUTHOR 2 Y.KOBAYASHI REVDAT 3 16-FEB-22 1BQT 1 REMARK REVDAT 2 24-FEB-09 1BQT 1 VERSN REVDAT 1 18-MAY-99 1BQT 0 JRNL AUTH A.SATO,S.NISHIMURA,T.OHKUBO,Y.KYOGOKU,S.KOYAMA,M.KOBAYASHI, JRNL AUTH 2 T.YASUDA,Y.KOBAYASHI JRNL TITL THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH JRNL TITL 2 FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY. JRNL REF INT.J.PEPT.PROTEIN RES. V. 41 433 1993 JRNL REFN ISSN 0367-8377 JRNL PMID 8391516 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.SATO,S.NISHIMURA,T.OHKUBO,Y.KYOGOKU,S.KOYAMA,M.KOBAYASHI, REMARK 1 AUTH 2 T.YASUDA,Y.KOBAYASHI REMARK 1 TITL 1H-NMR ASSIGNMENT AND SECONDARY STRUCTURE OF HUMAN REMARK 1 TITL 2 INSULIN-LIKE GROWTH FACTOR-I (IGF-I) IN SOLUTION REMARK 1 REF J.BIOCHEM.(TOKYO) V. 111 529 1992 REMARK 1 REFN ISSN 0021-924X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DADAS, DADAS REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BQT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172011. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : H2O/D2O=9/1 CONTAINING 10 ACETIC REMARK 210 ACID-D4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; HOHAHA; NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : GSX500; AMX500 REMARK 210 SPECTROMETER MANUFACTURER : JEOL; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 6 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING HOMONUCLEAR NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 -101.73 66.69 REMARK 500 1 CYS A 6 -40.27 159.28 REMARK 500 1 ASP A 20 29.18 -154.32 REMARK 500 1 ARG A 21 77.53 163.40 REMARK 500 1 PHE A 23 98.48 -31.25 REMARK 500 1 PHE A 25 90.11 -49.66 REMARK 500 1 ASN A 26 27.35 43.01 REMARK 500 1 THR A 29 130.97 58.61 REMARK 500 1 TYR A 31 75.34 -163.96 REMARK 500 1 SER A 34 136.62 61.77 REMARK 500 1 SER A 35 162.26 85.31 REMARK 500 1 ARG A 36 91.18 68.00 REMARK 500 1 ARG A 37 165.49 55.43 REMARK 500 1 ALA A 38 49.42 -170.87 REMARK 500 1 GLN A 40 98.32 168.70 REMARK 500 1 THR A 41 -13.14 83.34 REMARK 500 1 GLU A 46 -83.08 -95.05 REMARK 500 1 PHE A 49 -67.16 -109.51 REMARK 500 1 ARG A 50 33.53 -177.47 REMARK 500 1 LEU A 54 -107.84 -135.17 REMARK 500 1 ARG A 55 52.62 38.97 REMARK 500 1 ARG A 56 -36.42 179.72 REMARK 500 1 ALA A 62 145.59 60.78 REMARK 500 1 LYS A 68 139.22 67.82 REMARK 500 1 SER A 69 -78.21 -57.85 REMARK 500 2 THR A 4 -156.98 -154.71 REMARK 500 2 LEU A 5 120.00 -173.14 REMARK 500 2 CYS A 6 -92.72 159.38 REMARK 500 2 GLU A 9 39.61 -88.89 REMARK 500 2 GLN A 15 34.17 -92.42 REMARK 500 2 PHE A 16 -63.25 -136.01 REMARK 500 2 ASP A 20 16.69 84.34 REMARK 500 2 ARG A 21 48.47 164.69 REMARK 500 2 PHE A 23 -130.05 -131.94 REMARK 500 2 TYR A 24 -95.16 56.91 REMARK 500 2 PHE A 25 30.49 36.28 REMARK 500 2 TYR A 31 75.19 -163.84 REMARK 500 2 SER A 33 103.96 -47.55 REMARK 500 2 SER A 34 128.40 -179.34 REMARK 500 2 ARG A 36 95.58 46.02 REMARK 500 2 ARG A 37 62.71 179.72 REMARK 500 2 GLN A 40 81.85 178.57 REMARK 500 2 GLU A 46 -42.18 -137.99 REMARK 500 2 ASP A 53 167.41 -43.72 REMARK 500 2 LEU A 54 31.86 -99.60 REMARK 500 2 TYR A 60 43.66 -104.90 REMARK 500 2 ALA A 62 -172.41 46.88 REMARK 500 2 LEU A 64 154.36 -40.48 REMARK 500 3 PRO A 2 38.97 -74.72 REMARK 500 3 GLU A 3 36.77 -176.30 REMARK 500 REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 21 0.28 SIDE CHAIN REMARK 500 1 ARG A 37 0.27 SIDE CHAIN REMARK 500 1 ARG A 50 0.18 SIDE CHAIN REMARK 500 1 ARG A 55 0.27 SIDE CHAIN REMARK 500 1 ARG A 56 0.19 SIDE CHAIN REMARK 500 2 ARG A 21 0.29 SIDE CHAIN REMARK 500 2 ARG A 36 0.27 SIDE CHAIN REMARK 500 2 ARG A 37 0.18 SIDE CHAIN REMARK 500 2 ARG A 55 0.18 SIDE CHAIN REMARK 500 2 ARG A 56 0.26 SIDE CHAIN REMARK 500 3 ARG A 21 0.30 SIDE CHAIN REMARK 500 3 ARG A 36 0.29 SIDE CHAIN REMARK 500 3 ARG A 37 0.29 SIDE CHAIN REMARK 500 3 ARG A 50 0.20 SIDE CHAIN REMARK 500 3 ARG A 55 0.29 SIDE CHAIN REMARK 500 4 ARG A 21 0.17 SIDE CHAIN REMARK 500 4 ARG A 36 0.15 SIDE CHAIN REMARK 500 4 ARG A 37 0.29 SIDE CHAIN REMARK 500 4 ARG A 50 0.22 SIDE CHAIN REMARK 500 4 ARG A 55 0.11 SIDE CHAIN REMARK 500 5 ARG A 21 0.11 SIDE CHAIN REMARK 500 5 ARG A 37 0.14 SIDE CHAIN REMARK 500 5 ARG A 50 0.27 SIDE CHAIN REMARK 500 5 ARG A 55 0.09 SIDE CHAIN REMARK 500 6 ARG A 21 0.30 SIDE CHAIN REMARK 500 6 ARG A 36 0.16 SIDE CHAIN REMARK 500 6 ARG A 37 0.18 SIDE CHAIN REMARK 500 6 ARG A 50 0.23 SIDE CHAIN REMARK 500 6 ARG A 55 0.28 SIDE CHAIN REMARK 500 6 ARG A 56 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BQT A 1 70 UNP P05019 IGF1B_HUMAN 49 118 SEQRES 1 A 70 GLY PRO GLU THR LEU CYS GLY ALA GLU LEU VAL ASP ALA SEQRES 2 A 70 LEU GLN PHE VAL CYS GLY ASP ARG GLY PHE TYR PHE ASN SEQRES 3 A 70 LYS PRO THR GLY TYR GLY SER SER SER ARG ARG ALA PRO SEQRES 4 A 70 GLN THR GLY ILE VAL ASP GLU CYS CYS PHE ARG SER CYS SEQRES 5 A 70 ASP LEU ARG ARG LEU GLU MET TYR CYS ALA PRO LEU LYS SEQRES 6 A 70 PRO ALA LYS SER ALA HELIX 1 1 VAL A 11 VAL A 17 1 7 HELIX 2 2 LEU A 57 MET A 59 5 3 SSBOND 1 CYS A 6 CYS A 48 1555 1555 2.00 SSBOND 2 CYS A 18 CYS A 61 1555 1555 1.98 SSBOND 3 CYS A 47 CYS A 52 1555 1555 2.12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000