PDB Short entry for 1BUS HEADER PROTEINASE INHIBITOR 14-MAY-90 1BUS TITLE SOLUTION CONFORMATION OF PROTEINASE INHIBITOR IIA FROM BULL SEMINAL TITLE 2 PLASMA BY 1H NUCLEAR MAGNETIC RESONANCE AND DISTANCE GEOMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE INHIBITOR IIA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS PROTEINASE INHIBITOR EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR P.GUNTERT,M.P.WILLIAMSON,T.F.HAVEL,K.WUTHRICH REVDAT 5 25-DEC-19 1BUS 1 SEQRES LINK REVDAT 4 29-NOV-17 1BUS 1 REMARK HELIX REVDAT 3 24-FEB-09 1BUS 1 VERSN REVDAT 2 15-JUL-91 1BUS 1 HEADER SOURCE EXPDTA REVDAT 1 15-APR-91 1BUS 0 JRNL AUTH M.P.WILLIAMSON,T.F.HAVEL,K.WUTHRICH JRNL TITL SOLUTION CONFORMATION OF PROTEINASE INHIBITOR IIA FROM BULL JRNL TITL 2 SEMINAL PLASMA BY 1H NUCLEAR MAGNETIC RESONANCE AND DISTANCE JRNL TITL 3 GEOMETRY. JRNL REF J.MOL.BIOL. V. 182 295 1985 JRNL REFN ISSN 0022-2836 JRNL PMID 3839023 JRNL DOI 10.1016/0022-2836(85)90347-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.P.WILLIAMSON,D.MARION,K.WUTHRICH REMARK 1 TITL SECONDARY STRUCTURE IN THE SOLUTION CONFORMATION OF THE REMARK 1 TITL 2 PROTEINASE INHIBITOR IIA FROM BULL SEMINAL PLASMA BY NUCLEAR REMARK 1 TITL 3 MAGNETIC RESONANCE REMARK 1 REF J.MOL.BIOL. V. 173 341 1984 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.STROP,G.WIDER,K.WUTHRICH REMARK 1 TITL ASSIGNMENT OF THE 1H NUCLEAR MAGNETIC RESONANCE SPECTRUM OF REMARK 1 TITL 2 THE PROTEINASE INHIBITOR IIA FROM BULL SEMINAL PLASMA BY REMARK 1 TITL 3 TWO-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE AT 500 MHZ REMARK 1 REF J.MOL.BIOL. V. 166 641 1983 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.STROP,K.WUTHRICH REMARK 1 TITL CHARACTERIZATION OF THE PROTEINASE INHIBITOR IIA FROM BULL REMARK 1 TITL 2 SEMINAL PLASMA BY 1H NUCLEAR MAGNETIC RESONANCE. STABILITY, REMARK 1 TITL 3 AMIDE PROTON EXCHANGE AND MOBILITY OF AROMATIC RESIDUES REMARK 1 REF J.MOL.BIOL. V. 166 631 1983 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BUS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172099. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 SER A 27 CA SER A 27 CB 0.098 REMARK 500 3 SER A 27 CA SER A 27 CB 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 16 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 1 CYS A 17 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 1 TYR A 32 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 1 TYR A 32 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 CYS A 36 N - CA - CB ANGL. DEV. = 11.7 DEGREES REMARK 500 2 PHE A 10 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 2 SER A 27 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 2 ASN A 50 N - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 3 SER A 27 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 3 SER A 27 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 3 SER A 27 CA - C - O ANGL. DEV. = 15.1 DEGREES REMARK 500 3 SER A 27 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 4 52.43 -97.84 REMARK 500 1 VAL A 5 40.41 -102.34 REMARK 500 1 LYS A 11 -74.67 -65.03 REMARK 500 1 VAL A 15 -86.89 -109.20 REMARK 500 1 THR A 18 -82.46 51.49 REMARK 500 1 ASN A 22 103.45 170.15 REMARK 500 1 PRO A 23 94.81 -69.88 REMARK 500 1 SER A 27 -79.98 -48.23 REMARK 500 1 ASN A 28 33.60 -147.74 REMARK 500 1 TYR A 32 -141.92 -154.76 REMARK 500 1 LYS A 44 51.71 -90.49 REMARK 500 1 LYS A 48 21.88 -147.45 REMARK 500 1 HIS A 53 -11.02 -47.15 REMARK 500 2 ALA A 3 -86.98 71.28 REMARK 500 2 GLN A 4 -5.91 75.56 REMARK 500 2 CYS A 7 47.62 -108.62 REMARK 500 2 LYS A 11 47.97 -94.11 REMARK 500 2 ASP A 12 160.93 -42.63 REMARK 500 2 LYS A 14 -36.94 171.03 REMARK 500 2 THR A 18 -85.35 -124.20 REMARK 500 2 ARG A 19 -155.81 -128.46 REMARK 500 2 ASN A 22 129.54 70.17 REMARK 500 2 SER A 27 -163.38 -114.85 REMARK 500 2 CYS A 36 -71.04 -62.36 REMARK 500 2 MET A 43 -78.18 -55.76 REMARK 500 2 LYS A 44 53.36 -91.47 REMARK 500 2 SER A 45 -74.01 -75.06 REMARK 500 2 LYS A 48 124.58 -172.67 REMARK 500 2 LYS A 52 -96.00 -106.50 REMARK 500 3 ALA A 3 62.05 -174.94 REMARK 500 3 ASP A 6 82.95 -159.23 REMARK 500 3 THR A 18 -75.40 -83.52 REMARK 500 3 ARG A 19 63.24 -100.14 REMARK 500 3 GLU A 20 171.44 -46.85 REMARK 500 3 SER A 21 74.89 -101.95 REMARK 500 3 ASN A 22 171.31 -41.38 REMARK 500 3 PRO A 23 92.08 5.04 REMARK 500 3 CYS A 25 -172.96 -64.86 REMARK 500 3 ASN A 28 -54.72 -162.81 REMARK 500 3 LYS A 48 146.27 178.57 REMARK 500 3 LEU A 51 109.92 48.37 REMARK 500 3 ARG A 54 165.11 -44.29 REMARK 500 4 ALA A 3 -1.25 75.35 REMARK 500 4 GLN A 4 -165.92 47.21 REMARK 500 4 CYS A 7 -57.86 -123.93 REMARK 500 4 LYS A 11 -87.86 -79.07 REMARK 500 4 PRO A 13 -60.91 -104.53 REMARK 500 4 VAL A 15 91.85 29.78 REMARK 500 4 CYS A 17 61.34 -152.86 REMARK 500 4 THR A 18 42.18 -165.29 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 19 0.27 SIDE CHAIN REMARK 500 1 HIS A 24 0.11 SIDE CHAIN REMARK 500 1 HIS A 53 0.22 SIDE CHAIN REMARK 500 1 ARG A 54 0.20 SIDE CHAIN REMARK 500 2 ARG A 19 0.25 SIDE CHAIN REMARK 500 2 HIS A 24 0.17 SIDE CHAIN REMARK 500 2 ARG A 54 0.30 SIDE CHAIN REMARK 500 3 HIS A 53 0.16 SIDE CHAIN REMARK 500 3 ARG A 54 0.27 SIDE CHAIN REMARK 500 4 ARG A 19 0.21 SIDE CHAIN REMARK 500 4 ARG A 54 0.29 SIDE CHAIN REMARK 500 5 ARG A 19 0.15 SIDE CHAIN REMARK 500 5 ARG A 54 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BUS RELATED DB: PDB DBREF 1BUS A 2 57 UNP P01001 IAC2_BOVIN 2 57 SEQRES 1 A 57 PCA GLY ALA GLN VAL ASP CYS ALA GLU PHE LYS ASP PRO SEQRES 2 A 57 LYS VAL TYR CYS THR ARG GLU SER ASN PRO HIS CYS GLY SEQRES 3 A 57 SER ASN GLY GLU THR TYR GLY ASN LYS CYS ALA PHE CYS SEQRES 4 A 57 LYS ALA VAL MET LYS SER GLY GLY LYS ILE ASN LEU LYS SEQRES 5 A 57 HIS ARG GLY LYS CYS MODRES 1BUS PCA A 1 GLN PYROGLUTAMIC ACID HET PCA A 1 10 HETNAM PCA PYROGLUTAMIC ACID FORMUL 1 PCA C5 H7 N O3 HELIX 1 H1 ASN A 34 SER A 45 1ALPHA HELIX 12 SHEET 1 S1 3 GLY A 29 GLY A 33 0 SHEET 2 S1 3 PRO A 23 SER A 27 -1 SHEET 3 S1 3 ASN A 50 GLY A 55 -1 SSBOND 1 CYS A 7 CYS A 39 1555 1555 2.11 SSBOND 2 CYS A 17 CYS A 36 1555 1555 1.99 SSBOND 3 CYS A 25 CYS A 57 1555 1555 1.97 LINK C PCA A 1 N GLY A 2 1555 1555 1.33 CISPEP 1 ASP A 12 PRO A 13 1 -0.02 CISPEP 2 ASP A 12 PRO A 13 2 0.12 CISPEP 3 ASP A 12 PRO A 13 3 -0.02 CISPEP 4 ASP A 12 PRO A 13 4 0.22 CISPEP 5 ASP A 12 PRO A 13 5 0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000